Update tools/pairtools/dedup.xml

Co-authored-by: Saim Momin <[email protected]>
galaxyproject · Mar 28, 2024 · cd46594 · cd46594
1 parent 64163f8
commit cd46594
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/tools/pairtools/dedup.xml b/tools/pairtools/dedup.xml
@@ -21,6 +21,8 @@
     <inputs>
         <param name="pairs_path" type="data" format="tabular" label="Input pairs file" help="Input triu-flipped sorted .pairs or .pairsam file."/>
         <param argument="--mark-dups" type="boolean" truevalue="--mark-dups" falsevalue="" checked="False" label="Duplicate pairs are marked as DD in pair_type and as a duplicate in the sam entries"></param>
+        <param argument="--output-dups" type="boolean" truevalue="--output-dups" falsevalue="" checked="False" label="Output file for duplicate pairs."></param>
+        <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Output file for duplicate statistics."></param>
     </inputs>
     <outputs>
         <data name="output_dedup_pairs" format="tabular" label="${tool.name} on ${on_string}: .pairsam"/>