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Update volcanoplot #6510

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merged 5 commits into from
Dec 9, 2024
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paulzierep
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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

<param name="shape_or_facet" value="facet" /> <!-- Testing the facet option -->
<output name="plot">
<assert_contents>
<has_size value="5007" delta="1000" />
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We do have better imaging asserts nowadays, if you want to give it a try.

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you mean compare="image_diff", or are there other undocumented diff options, I think not needed here

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<test expect_num_outputs="1">
<!-- Ensure input labels and plot options work -->
<param name="input" ftype="tabular" value="input.tab"/>
<param name="fdr_col" value="5" />
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fdr_col twice?

@bgruening
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ping @paulzierep

@bgruening bgruening merged commit 060f673 into galaxyproject:main Dec 9, 2024
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@pcm32
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pcm32 commented Dec 11, 2024

@bgruening the macros here are not being used in the version, and then this was uploaded to the toolshed without a version change, see https://github.com/galaxyproject/tools-iuc/pull/6510/files#diff-fa1711e49e2c00dd46c9d86d082e9091e5468442a270582b30e3c92cdad4557dR1

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pcm32 commented Dec 11, 2024

This explains #6620

@bgruening
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Do you see the problem in this PR?

@bgruening
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Ah I see. I can release a new version with bump, will this solve your problem?

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pcm32 commented Dec 11, 2024

I would prefer if the 0.0.6 version is reinstated in the toolshed to the last reasonable 0.0.6 revision, I have a bunch of workflows pinned to that. Also this is breaking an IWC workflow.

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pcm32 commented Dec 11, 2024

And then the newer changes are pushed in a different version

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pcm32 commented Dec 11, 2024

@bgruening if the tool XML and macros at 84949ce could be pushed to the toolshed as they are there, then we could have a subsequent PR where we simply flip the version for the newer changes, and "the past will be fixed" :-).

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3 participants