snippy: support --ctgs parameter #6591
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bernt-matthias
changed the title
| @@ -82,6 +87,10 @@ | |||
| <when value="paired_iv"> | |||
| <param name="fastq_input_interleaved" type="data" format="fastqsanger,fastqsanger.gz" label="Select fastq dataset" help="Specify dataset with interleaved reads"/> | |||
| </when> | |||
| <when value="contigs"> | |||
| <param name="fasta_input" type="data" format="fasta,fa,fna" label="Select fasta dataset" help="Specify dataset with assembled contigs"/> | |||
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In Galaxy we always call this fasta:
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| <param name="fasta_input" type="data" format="fasta,fa,fna" label="Select fasta dataset" help="Specify dataset with assembled contigs"/> | |
| <param name="fasta_input" type="data" format="fasta" label="Select fasta dataset" help="Specify dataset with assembled contigs"/> |
Do you know if (gzip) compressed input is supported? If so you could add fasta.gz to the list.
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Thank you for your help. I will add a test case, and check if fasta.gz is supported by snippy.
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FOR CONTRIBUTOR: