Move isn't needed when output prefix is specified

genome · Apr 15, 2019 · ef53b1e · ef53b1e
1 parent 9805a22
commit ef53b1e
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/optitype_script.sh b/optitype_script.sh
@@ -53,6 +53,3 @@ rm -f $TEMPDIR/$name.aln.map.rev.sam
 echo step 5: run Optitype
 # run optitype 
 python /usr/local/bin/OptiType/OptiTypePipeline.py -i $outdir/$name.hla.fwd.fastq $outdir/$name.hla.rev.fastq --dna -v -p $name -o $outdir
-
-#make sure files actually end up in $outdir and not $outdir/<timestamp>, which is where optitype puts them
-mv $outdir/*/* $outdir