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Somatic Variation

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zskidmor edited this page Apr 22, 2014 · 6 revisions

in progress

Contents

Process Flow
Description
- Alignment
- Somatic Variant Calling
  - SNV Callers
  - SNV Caller combination and filtering
  - Indel Callers
  - Indel Caller Filtering and Combination
  - CNV
  - SV
- dbSNP Annotation
- LOH Filtering
  - Footnotes * References
What is Somatic Variation?
Conceptual Pipeline Overview
Processing Profiles
- Updates
- Current Default
  - Test Models
    - RNA-seq and cDNA-Capture
    - WGS
    - Exome
Post Processing

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