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gigascience/galaxy-datasource-gigadb
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Steps to set up "send to gigagalaxy" function. Prerequirements: 1. http://localhost will show gigadb webpage. 2. http://localhost:8080 will show gigagalaxy webpage. Steps: 1. Gigadb: put the view.php file in the proper folder. In my case, it is here: /var/www/hosts/gigadb.cogini.com/htdocs/protected/views/dataset/view.php 2. GigaGalaxy: 2.1 gigadb.xml: Should be put under galaxy-central/tools/data_source/ The gigadb.xml file is in the gigagalaxy folder. 2.2 Add one more line in tool_conf.xml file: <tool file="data_source/gigadb.xml"/> Now it should work as expected. If you are using a different gigagalaxy URL instead of http://localhost:8080, there are two places that need to update. 1. In view.php file, update it in line 343 accordingly. 2. In gigadb.xml file, update it in line 10 accordingly.
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Provides access to GigaDB from GigaGalaxy
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