Bump mamba-org/setup-micromamba from 1 to 2 in the actions-version group #62
Workflow file for this run
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name: Unit test | |
env: | |
# TODO: Set COMPONENT_NAME to the name of your Python package. | |
COMPONENT_NAME: template | |
# Most components should not modify the rest of this file. When needed, merge in updates from | |
# https://github.com/glotzerlab/hoomd-component-template/ | |
############################################################################################# | |
# HOOMD-blue version to build. | |
HOOMD_BLUE_VERSION: v4.9.0 | |
# prevent deadlocked MPI tests from causing the job to cancel | |
MPIEXEC_TIMEOUT: 3000 | |
# allow mpirun to execute as root in the tests | |
OMPI_ALLOW_RUN_AS_ROOT: 1 | |
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
# allow openmpi to oversubscribe cores | |
PRTE_MCA_rmaps_default_mapping_policy: ":oversubscribe" | |
OMPI_MCA_rmaps_base_oversubscribe: "true" | |
# prevent errors from mis-configured openib systems | |
OMPI_MCA_btl: "vader,self" | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
on: | |
pull_request: | |
push: | |
branches: [trunk] | |
workflow_dispatch: | |
defaults: | |
run: | |
shell: bash | |
jobs: | |
build_test: | |
name: Build and test [${{ matrix.name }}] | |
runs-on: ubuntu-24.04 | |
container: | |
image: nvidia/cuda:12.5.0-devel-ubuntu22.04 | |
strategy: | |
fail-fast: false | |
matrix: | |
include: | |
- name: 'CPU' | |
enable_gpu: 'OFF' | |
enable_mpi: 'OFF' | |
- name: 'CPU, MPI' | |
enable_gpu: 'OFF' | |
enable_mpi: 'ON' | |
- name: 'GPU' | |
enable_gpu: 'ON' | |
enable_mpi: 'OFF' | |
- name: 'GPU, MPI' | |
enable_gpu: 'ON' | |
enable_mpi: 'ON' | |
steps: | |
- name: Restore cached HOOMD-blue build | |
id: cache | |
uses: actions/cache/restore@v4 | |
with: | |
path: install | |
key: hoomd-blue-${{ env.HOOMD_BLUE_VERSION }}-${{ matrix.enable_mpi }}-gpu-${{ matrix.enable_gpu }} | |
- name: Install git | |
run: | | |
apt-get update | |
apt-get install git --yes | |
- name: Checkout HOOMD-blue | |
uses: actions/checkout@v4 | |
with: | |
repository: glotzerlab/hoomd-blue | |
path: hoomd-blue | |
submodules: true | |
ref: ${{ env.HOOMD_BLUE_VERSION }} | |
- name: Create Python Environment | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
environment-name: test | |
environment-file: hoomd-blue/.github/workflows/environments/py312-conda-lock.yml | |
micromamba-root-path: ${{ github.workspace }}/micromamba | |
- name: Configure conda environment variables | |
run: | | |
echo "PYTHONPATH=$GITHUB_WORKSPACE/install" >> $GITHUB_ENV | |
echo "CONDA_PREFIX=$MAMBA_ROOT_PREFIX/envs/test" >> $GITHUB_ENV | |
echo "CMAKE_PREFIX_PATH=$MAMBA_ROOT_PREFIX/envs/test" >> $GITHUB_ENV | |
echo "$MAMBA_ROOT_PREFIX/envs/test/bin" >> $GITHUB_PATH | |
- name: Configure HOOMD-blue | |
if: steps.cache.outputs.cache-hit != 'true' | |
run: | | |
cmake -B build-hoomd-blue -S hoomd-blue \ | |
-GNinja \ | |
-DCMAKE_BUILD_TYPE=Release \ | |
-DENABLE_GPU=${ENABLE_GPU} \ | |
-DENABLE_MPI=${ENABLE_MPI} \ | |
-DCUDA_ARCH_LIST="70" \ | |
-DBUILD_TESTING=OFF \ | |
-DPLUGINS="" \ | |
-DCMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/install | |
env: | |
ENABLE_GPU: ${{ matrix.enable_gpu }} | |
ENABLE_MPI: ${{ matrix.enable_mpi }} | |
- name: Build HOOMD-blue | |
if: steps.cache.outputs.cache-hit != 'true' | |
run: ninja install -j $(($(getconf _NPROCESSORS_ONLN) + 2)) | |
working-directory: build-hoomd-blue | |
- name: Cache HOOMD-blue build | |
if: steps.cache.outputs.cache-hit != 'true' | |
uses: actions/cache/save@v4 | |
with: | |
path: install | |
key: hoomd-blue-${{ env.HOOMD_BLUE_VERSION }}-${{ matrix.enable_mpi }}-gpu-${{ matrix.enable_gpu }} | |
- name: Checkout component | |
uses: actions/checkout@v4 | |
with: | |
path: component | |
- name: Configure component | |
run: CMAKE_PREFIX_PATH=${GITHUB_WORKSPACE}/install cmake -S component -B build-component -GNinja -DCMAKE_BUILD_TYPE=Release | |
- name: Build component | |
run: ninja install -j $(($(getconf _NPROCESSORS_ONLN) + 2)) | |
working-directory: build-component | |
- name: Run pytest (serial) | |
run: python3 -m pytest --pyargs hoomd.${COMPONENT_NAME} -x -v -ra --durations=0 --durations-min=0.1 | |
- name: Run pytest (MPI) | |
if: ${{ matrix.enable_mpi == 'ON' }} | |
run: mpirun -n 2 ${GITHUB_WORKSPACE}/install/hoomd/pytest/pytest-openmpi.sh --pyargs hoomd.${COMPONENT_NAME} -x -v -ra --durations=0 --durations-min=0.1 || (( cat pytest.out.1 && exit 1 )) |