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Bump mamba-org/setup-micromamba from 1 to 2 in the actions-version group #62

Bump mamba-org/setup-micromamba from 1 to 2 in the actions-version group

Bump mamba-org/setup-micromamba from 1 to 2 in the actions-version group #62

Workflow file for this run

name: Unit test
env:
# TODO: Set COMPONENT_NAME to the name of your Python package.
COMPONENT_NAME: template
# Most components should not modify the rest of this file. When needed, merge in updates from
# https://github.com/glotzerlab/hoomd-component-template/
#############################################################################################
# HOOMD-blue version to build.
HOOMD_BLUE_VERSION: v4.9.0
# prevent deadlocked MPI tests from causing the job to cancel
MPIEXEC_TIMEOUT: 3000
# allow mpirun to execute as root in the tests
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
# allow openmpi to oversubscribe cores
PRTE_MCA_rmaps_default_mapping_policy: ":oversubscribe"
OMPI_MCA_rmaps_base_oversubscribe: "true"
# prevent errors from mis-configured openib systems
OMPI_MCA_btl: "vader,self"
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
on:
pull_request:
push:
branches: [trunk]
workflow_dispatch:
defaults:
run:
shell: bash
jobs:
build_test:
name: Build and test [${{ matrix.name }}]
runs-on: ubuntu-24.04
container:
image: nvidia/cuda:12.5.0-devel-ubuntu22.04
strategy:
fail-fast: false
matrix:
include:
- name: 'CPU'
enable_gpu: 'OFF'
enable_mpi: 'OFF'
- name: 'CPU, MPI'
enable_gpu: 'OFF'
enable_mpi: 'ON'
- name: 'GPU'
enable_gpu: 'ON'
enable_mpi: 'OFF'
- name: 'GPU, MPI'
enable_gpu: 'ON'
enable_mpi: 'ON'
steps:
- name: Restore cached HOOMD-blue build
id: cache
uses: actions/cache/restore@v4
with:
path: install
key: hoomd-blue-${{ env.HOOMD_BLUE_VERSION }}-${{ matrix.enable_mpi }}-gpu-${{ matrix.enable_gpu }}
- name: Install git
run: |
apt-get update
apt-get install git --yes
- name: Checkout HOOMD-blue
uses: actions/checkout@v4
with:
repository: glotzerlab/hoomd-blue
path: hoomd-blue
submodules: true
ref: ${{ env.HOOMD_BLUE_VERSION }}
- name: Create Python Environment
uses: mamba-org/setup-micromamba@v2
with:
environment-name: test
environment-file: hoomd-blue/.github/workflows/environments/py312-conda-lock.yml
micromamba-root-path: ${{ github.workspace }}/micromamba
- name: Configure conda environment variables
run: |
echo "PYTHONPATH=$GITHUB_WORKSPACE/install" >> $GITHUB_ENV
echo "CONDA_PREFIX=$MAMBA_ROOT_PREFIX/envs/test" >> $GITHUB_ENV
echo "CMAKE_PREFIX_PATH=$MAMBA_ROOT_PREFIX/envs/test" >> $GITHUB_ENV
echo "$MAMBA_ROOT_PREFIX/envs/test/bin" >> $GITHUB_PATH
- name: Configure HOOMD-blue
if: steps.cache.outputs.cache-hit != 'true'
run: |
cmake -B build-hoomd-blue -S hoomd-blue \
-GNinja \
-DCMAKE_BUILD_TYPE=Release \
-DENABLE_GPU=${ENABLE_GPU} \
-DENABLE_MPI=${ENABLE_MPI} \
-DCUDA_ARCH_LIST="70" \
-DBUILD_TESTING=OFF \
-DPLUGINS="" \
-DCMAKE_INSTALL_PREFIX=${GITHUB_WORKSPACE}/install
env:
ENABLE_GPU: ${{ matrix.enable_gpu }}
ENABLE_MPI: ${{ matrix.enable_mpi }}
- name: Build HOOMD-blue
if: steps.cache.outputs.cache-hit != 'true'
run: ninja install -j $(($(getconf _NPROCESSORS_ONLN) + 2))
working-directory: build-hoomd-blue
- name: Cache HOOMD-blue build
if: steps.cache.outputs.cache-hit != 'true'
uses: actions/cache/save@v4
with:
path: install
key: hoomd-blue-${{ env.HOOMD_BLUE_VERSION }}-${{ matrix.enable_mpi }}-gpu-${{ matrix.enable_gpu }}
- name: Checkout component
uses: actions/checkout@v4
with:
path: component
- name: Configure component
run: CMAKE_PREFIX_PATH=${GITHUB_WORKSPACE}/install cmake -S component -B build-component -GNinja -DCMAKE_BUILD_TYPE=Release
- name: Build component
run: ninja install -j $(($(getconf _NPROCESSORS_ONLN) + 2))
working-directory: build-component
- name: Run pytest (serial)
run: python3 -m pytest --pyargs hoomd.${COMPONENT_NAME} -x -v -ra --durations=0 --durations-min=0.1
- name: Run pytest (MPI)
if: ${{ matrix.enable_mpi == 'ON' }}
run: mpirun -n 2 ${GITHUB_WORKSPACE}/install/hoomd/pytest/pytest-openmpi.sh --pyargs hoomd.${COMPONENT_NAME} -x -v -ra --durations=0 --durations-min=0.1 || (( cat pytest.out.1 && exit 1 ))