ddRAD-Seq

Scripts useful in ddRAD-Seq data analysis

1. RE_Digestion.py : insilico double digestion of genome.
2. imputeData_v2.py : to generate the given percentage of missing data in a structure format.
3. merge_read_pair_QS.py : Beta version to merge read-pairs in a bam file.
4. pysam_parser.py : This shows the usage of pysam module.
5. realign_bam_parallel.sh : Shows the use of GNU Parallel for realigning the BAM file and subsequent SNP calling using samtools.