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update to fix issue caporaso-lab-graveyard#73
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also updated usage examples to reflect recent change to allow this to run without any parameters (i.e., everything gets read/built from qiime_config, if available, and if not the parameters are required.
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gregcaporaso committed Dec 20, 2012
1 parent 18530cb commit ac0a03b
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions script_usage_tests.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,8 +25,8 @@
script_info['brief_description'] = ""
script_info['script_description'] = ""
script_info['script_usage'] = []
script_info['script_usage'].append(("Run a subset of the interface tests in verbose mode","Run interface tests for the add_taxa.py and make_otu_table.py scripts. This illustrates how to run from the qiime_test_dir directory.","%prog -i $PWD/ -l $HOME/qime_script_tests.log -t add_taxa,make_otu_table -v"))
script_info['script_usage'].append(("Run all of the interface tests","Run all script interface tests. This illustrates how to run from the qiime_test_dir directory.","%prog -i $PWD/ -l $HOME/all_qime_script_tests.log"))
script_info['script_usage'].append(("Run a subset of the interface tests in verbose mode","Run interface tests for the count_seqs.py and make_otu_table.py scripts. This illustrates how to run from the qiime_test_dir directory.","%prog -t count_seqs,make_otu_table -v"))
script_info['script_usage'].append(("Run all of the interface tests","Run all script interface tests. This illustrates how to run from the qiime_test_dir directory.","%prog"))
script_info['output_description']= ""
script_info['required_options'] = []

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