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Replace deprecated conda develop #26

Replace deprecated conda develop

Replace deprecated conda develop #26

Workflow file for this run

name: model-testing
on: [push]
jobs:
run:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -el {0}
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
with:
miniforge-variant: Mambaforge
auto-update-conda: true
python-version: '3.7'
activate-environment: core-analysis
use-only-tar-bz2: true
use-mamba: true
- name: Set cache date
run: echo "DATE=$(date +'%Y%m%d')" >> $GITHUB_ENV
- uses: actions/cache@v2
env:
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs
key:
conda-${{ hashFiles('environment.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}
- name: Update environment
run: mamba update -n core-analysis -f environment.yml
if: steps.cache.outputs.cache-hit != 'true'
- uses: actions/setup-node@v3
with:
node-version: '16'
- uses: iterative/setup-cml@v1
- name: Train model
env:
REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
CML: https://github.com/iterative/cml/releases/latest/download/cml-linux-x64
run: |
# dvc remote add data gdrive://1SSuE4GVQ5xjePujH0AGdXBVWXauanteG
# dvc remote add images gdrive://1iYyv9QR9NK7XXVaN4IzFAtQPgDWdYYlY
# dvc pull data
# dvc pull images
pip install --no-build-isolation --no-deps -e .
python core_analysis --train --test --do-augment
cat metrics.txt >> report.md
echo "![](./plot.png)" >> report.md
cml comment create report.md