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22 Open 37 Closed
22 Open 37 Closed
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Issues list

Failing test: test_merge_and_average fails with a TypeError with pandas 2.0.3
#84 opened Jul 16, 2024 by olp-cs
1
UnboundLocalError when GSE non-existent
#82 opened Sep 26, 2023 by jonasfreimuth
1
download fails because of content-length mismatch when content-encoding=gzip
#80 opened Jan 7, 2022 by vttrifonov
1
Summary GSM metadata table
#79 opened Dec 2, 2021 by RemyLau
Skip conversion to fastq if existing
#78 opened Oct 8, 2021 by hschult
Suggestion for an improvement of the GEOparse.utils.smart_open() function
#76 opened Sep 23, 2021 by abysslover
Suggestion for an improvement of the GEOparse.__parse_entry() function
#75 opened Sep 23, 2021 by abysslover
Phenotype data does not use pandas dtype inference
#74 opened Sep 22, 2021 by hardingnj
1
GEOparse not downloading a supplementary file for a GSE
#72 opened Jun 15, 2021 by grisaitis
DtypeWarning: Columns (7) have mixed types.
#70 opened May 17, 2021 by CholoTook
4
Am I doin it rong?
#69 opened May 17, 2021 by CholoTook
1
UnboundLocalError while trying the example from documentation
#65 opened Dec 10, 2020 by sowmyamanojna
2
cannot download and parse GEO files
#62 opened Jul 10, 2020 by Mengflz
11
Warning if fastq-dump is not installed or on $PATH
#58 opened Apr 9, 2019 by JohnWSteill
1
Missing File Error when GEO is Down bug enhancement
#51 opened Jan 29, 2019 by Miserlou
1
showing all SRRs for a particular GSM possible enhancement
#42 opened Apr 11, 2018 by golobor
1
Remove downloaded archive // Cleanup enhancement
#41 opened Apr 4, 2018 by Miserlou
1
Download MINiML enhancement
#40 opened Apr 3, 2018 by Miserlou
1
SRR type now known
#37 opened Jan 23, 2018 by antonkulaga
1
Some samples don't have table data! bug
#36 opened Jan 11, 2018 by halioui
6
Possibility to download all GEO data locally. enhancement
#28 opened Jul 15, 2017 by bgriffen
1
check for converted sra-s enhancement
#27 opened Jun 27, 2017 by antonkulaga
1
ProTip! Exclude everything labeled bug with -label:bug.