Skip to content

Issues: hall-lab/svtyper

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 39 Closed
45 Open 39 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Svtyper does not support TRA type.
#128 opened Jun 16, 2024 by pingxinxing
Warning: Unsupported SVTYPE at variant MantaBND:93:0:1:0:1:0:0 (TRA). Skipping.
#127 opened Jun 7, 2024 by pingxinxing
1
KeyError: 'RG'
#126 opened Oct 11, 2023 by karen916
how to filter SV using the "QUAL" threshold
#125 opened Jul 20, 2023 by jackzhong1995
Reference calls with no support and missing calls
#124 opened Aug 23, 2021 by aariani
I have question about Genotype information in SVtyper output
#123 opened Jun 9, 2021 by u1200538
Issue while running the executable.
#122 opened Apr 23, 2021 by kghimire09
5
update for original paper link
#120 opened Oct 31, 2020 by esolares
Error: invalid FORMAT field, "+"
#118 opened Aug 29, 2020 by edgarsierraorozco
The meaning of the parameters
#117 opened Aug 21, 2020 by tyyiyi
Precise breakpoints
#116 opened Jun 21, 2020 by biozzq
Failed to build insert size histogram for paired-end reads.
#115 opened Jun 16, 2020 by tirohia
Key Error(s) being thrown for various call sets in C elegans
#114 opened Apr 21, 2020 by moldach
annotate translocations with svtyper
#113 opened Apr 7, 2020 by jazberna1
2
recommendation for numpy version for svtyper 0.7.1
#109 opened Oct 14, 2019 by kgaonkar6
How to understand the output genotyped from svtyper?
#108 opened Oct 13, 2019 by xujinshengjsxu
is there a clear pipline for paired or tumor-only and json file is what? thanks a lot
#106 opened Aug 17, 2019 by wentgithub
header parsing can't handle ">" in description
#105 opened May 22, 2019 by brentp
3
svtyper-sso can not deal with multiple bam files?
#104 opened Apr 30, 2019 by verne91
KeyError: 'CIPOS'
#103 opened Apr 29, 2019 by verne91
1
On making precision-recall curves: quality info? lenient parameters?
#101 opened Mar 7, 2019 by jmonlong
Does svtyper calculate read pairs which have long overlap twice?
#100 opened Feb 15, 2019 by xyw1
SVtyper questions / issues
#99 opened Dec 11, 2018 by calhoujd
Question about parameter 'max_reads' of classic svtyper.
#98 opened Sep 14, 2018 by lss1227
Best FORMAT field for filtering SVTyper Output
#95 opened Sep 7, 2018 by andrewSharo
2
ProTip! Find all open issues with in progress development work with linked:pr.