H-3762, H-3763, H-3757: Experiment with biome

[indietyp]

🌟 What is the purpose of this PR?

Biome is a suite of TypeScript tools that are written in Rust (originally known as Rome), it allows us to lint, format, and analyse a whole suite of problems.

The hope is that biome enables developers to have a faster workflow with minimal intrusions.

Some stats: fix:prettier previously took 20 seconds(!), fix:biome now takes 293ms, that's a 70x speed increase.

We also no longer need a .prettierignore file, meaning we're just down to .dockerignore and .gitignore.

🔗 Related links

• Biome

🔍 What does this change?

• initialize biome
• replace prettier with biome
• replace prettier package.json plugin with sort-package-json package
• adjust lefthook (drive-by)
• adjust CI

Pre-Merge Checklist 🚀

🚢 Has this modified a publishable library?

This PR:

• does not modify any publishable blocks or libraries, or modifications do not need publishing

📜 Does this require a change to the docs?

The changes in this PR:

• require changes to docs which are made as part of this PR

🕸️ Does this require a change to the Turbo Graph?

The changes in this PR:

• do not affect the execution graph

[codecov]

Codecov Report

Attention: Patch coverage is 0% with 120 lines in your changes missing coverage. Please review.

Project coverage is 21.69%. Comparing base (55f9064) to head (6ef88fc).

Files with missing lines	Patch %	Lines
apps/hash-api/src/integrations/linear/oauth.ts	0.00%	68 Missing ⚠️
...hash-api/src/integrations/google/oauth-callback.ts	0.00%	36 Missing ⚠️
...-api/src/integrations/google/check-access-token.ts	0.00%	4 Missing ⚠️
...sh-api/src/integrations/google/get-access-token.ts	0.00%	4 Missing ⚠️
...h-isomorphic-utils/src/flows/action-definitions.ts	0.00%	4 Missing ⚠️
...l/hash-isomorphic-utils/src/simplify-properties.ts	0.00%	4 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #6031      +/-   ##
==========================================
- Coverage   21.72%   21.69%   -0.04%     
==========================================
  Files         566      566              
  Lines       19156    19156              
  Branches     2755     2755              
==========================================
- Hits         4162     4156       -6     
- Misses      14942    14949       +7     
+ Partials       52       51       -1     

Flag	Coverage Δ
apps.hash-ai-worker-ts	1.32% <ø> (ø)
apps.hash-api	1.16% <0.00%> (ø)
blockprotocol.type-system	46.42% <ø> (ø)
local.harpc-client	50.17% <ø> (ø)
local.hash-backend-utils	8.81% <ø> (ø)
local.hash-graph-sdk	58.62% <ø> (ø)
local.hash-isomorphic-utils	0.98% <0.00%> (ø)
local.hash-subgraph	24.54% <ø> (ø)
rust.deer	6.66% <ø> (ø)
rust.error-stack	72.51% <ø> (ø)
rust.sarif	88.66% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

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[indietyp]

CI is failing because yarn install modifies the package.json files and formats them, even though they're formatted by prettier.

see: yarnpkg/berry#2636 (reply in thread)

[github-actions]

Benchmark results

@rust/hash-graph-benches – Integrations

representative_read_entity

Function	Value	Mean	Flame graphs
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/building/v/1	$$16.3 \mathrm{ms} \pm 175 \mathrm{μs}\left({\color{lightgreen}-28.247 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/page/v/2	$$15.8 \mathrm{ms} \pm 149 \mathrm{μs}\left({\color{gray}-3.174 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/book/v/1	$$15.7 \mathrm{ms} \pm 154 \mathrm{μs}\left({\color{gray}-4.033 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/organization/v/1	$$16.9 \mathrm{ms} \pm 163 \mathrm{μs}\left({\color{gray}4.37 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/block/v/1	$$16.1 \mathrm{ms} \pm 154 \mathrm{μs}\left({\color{gray}2.58 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/playlist/v/1	$$15.4 \mathrm{ms} \pm 184 \mathrm{μs}\left({\color{lightgreen}-6.268 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/song/v/1	$$16.3 \mathrm{ms} \pm 164 \mathrm{μs}\left({\color{gray}2.01 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/person/v/1	$$16.4 \mathrm{ms} \pm 163 \mathrm{μs}\left({\color{lightgreen}-27.791 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	entity type ID: https://blockprotocol.org/@alice/types/entity-type/uk-address/v/1	$$15.6 \mathrm{ms} \pm 176 \mathrm{μs}\left({\color{lightgreen}-15.349 \mathrm{\%}}\right) $$	Flame Graph

representative_read_multiple_entities

Function	Value	Mean	Flame graphs
entity_by_property	depths: DT=255, PT=255, ET=255, E=255	$$66.1 \mathrm{ms} \pm 401 \mathrm{μs}\left({\color{gray}-0.246 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=0	$$38.7 \mathrm{ms} \pm 234 \mathrm{μs}\left({\color{gray}-1.478 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=2, PT=2, ET=2, E=2	$$56.6 \mathrm{ms} \pm 269 \mathrm{μs}\left({\color{gray}-0.832 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=0, E=2	$$43.0 \mathrm{ms} \pm 286 \mathrm{μs}\left({\color{gray}-1.276 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=0, ET=2, E=2	$$48.7 \mathrm{ms} \pm 338 \mathrm{μs}\left({\color{gray}-0.535 \mathrm{\%}}\right) $$	Flame Graph
entity_by_property	depths: DT=0, PT=2, ET=2, E=2	$$53.2 \mathrm{ms} \pm 307 \mathrm{μs}\left({\color{gray}-0.389 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=255, PT=255, ET=255, E=255	$$102 \mathrm{ms} \pm 567 \mathrm{μs}\left({\color{gray}0.280 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=0	$$38.8 \mathrm{ms} \pm 274 \mathrm{μs}\left({\color{gray}-0.007 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=2, PT=2, ET=2, E=2	$$93.1 \mathrm{ms} \pm 484 \mathrm{μs}\left({\color{gray}0.319 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=0, E=2	$$76.4 \mathrm{ms} \pm 301 \mathrm{μs}\left({\color{gray}-0.041 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=0, ET=2, E=2	$$85.0 \mathrm{ms} \pm 511 \mathrm{μs}\left({\color{gray}-0.345 \mathrm{\%}}\right) $$	Flame Graph
link_by_source_by_property	depths: DT=0, PT=2, ET=2, E=2	$$89.2 \mathrm{ms} \pm 518 \mathrm{μs}\left({\color{gray}-0.285 \mathrm{\%}}\right) $$	Flame Graph

representative_read_entity_type

Function	Value	Mean	Flame graphs
get_entity_type_by_id	Account ID: d4e16033-c281-4cde-aa35-9085bf2e7579	$$2.11 \mathrm{ms} \pm 5.96 \mathrm{μs}\left({\color{gray}0.416 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_one_depth

Function	Value	Mean	Flame graphs
entity_by_id	50 entities	$$5.62 \mathrm{s} \pm 280 \mathrm{ms}\left({\color{red}5.56 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$27.1 \mathrm{ms} \pm 342 \mathrm{μs}\left({\color{gray}1.92 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$20.4 \mathrm{ms} \pm 69.8 \mathrm{μs}\left({\color{gray}-0.730 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$31.2 \mathrm{ms} \pm 156 \mathrm{μs}\left({\color{gray}-0.941 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$173 \mathrm{ms} \pm 627 \mathrm{μs}\left({\color{gray}-2.378 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_linkless

Function	Value	Mean	Flame graphs
entity_by_id	1 entities	$$1.91 \mathrm{ms} \pm 5.90 \mathrm{μs}\left({\color{gray}-0.896 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	100 entities	$$2.14 \mathrm{ms} \pm 8.41 \mathrm{μs}\left({\color{gray}2.19 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$1.94 \mathrm{ms} \pm 5.28 \mathrm{μs}\left({\color{gray}-0.028 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1000 entities	$$2.93 \mathrm{ms} \pm 16.0 \mathrm{μs}\left({\color{gray}3.85 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10000 entities	$$13.3 \mathrm{ms} \pm 42.7 \mathrm{μs}\left({\color{gray}-0.478 \mathrm{\%}}\right) $$	Flame Graph

scaling_read_entity_complete_zero_depth

Function	Value	Mean	Flame graphs
entity_by_id	50 entities	$$4.12 \mathrm{ms} \pm 19.5 \mathrm{μs}\left({\color{gray}3.69 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	5 entities	$$1.93 \mathrm{ms} \pm 5.85 \mathrm{μs}\left({\color{gray}-0.620 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	1 entities	$$1.92 \mathrm{ms} \pm 4.77 \mathrm{μs}\left({\color{gray}-0.188 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	10 entities	$$2.11 \mathrm{ms} \pm 11.9 \mathrm{μs}\left({\color{gray}1.07 \mathrm{\%}}\right) $$	Flame Graph
entity_by_id	25 entities	$$3.22 \mathrm{ms} \pm 8.11 \mathrm{μs}\left({\color{gray}-1.022 \mathrm{\%}}\right) $$	Flame Graph