Convert #8
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| name: Convert | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| xlsFile: | |
| description: 'XLS file with test data' | |
| required: true | |
| jobs: | |
| LoadNewCSV: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| - run: | | |
| cd /tmp &&\ | |
| wget https://github.com/hl7au/au-fhir-test-data-utils/releases/latest/download/xls-converter.zip &&\ | |
| unzip xls-converter.zip &&\ | |
| pip install xls_converter* &&\ | |
| rm -rf xls_converter* xls-converter.zip | |
| - run: python -m xls_converter.main ${{ github.event.inputs.xlsFile }} testdata-csv | |
| - name: Install .net deps | |
| uses: awalsh128/cache-apt-pkgs-action@latest | |
| with: | |
| packages: | |
| libicu-dev | |
| unzip | |
| execute_install_scripts: true | |
| - run: | | |
| cd /tmp &&\ | |
| wget https://github.com/hl7au/au-fhir-test-data-utils/releases/latest/download/Csv2FhirMapping-linux-arm64.zip &&\ | |
| unzip Csv2FhirMapping-linux-arm64.zip &&\ | |
| chmod +x Csv2FhirMapping-linux-arm64-binaries/Csv2Fhir | |
| - run: | | |
| cd Sparked.Csv2FhirMapping/ && | |
| declare resources=(\ | |
| "Patient"\ | |
| "Organization"\ | |
| "Location"\ | |
| "Practitioner"\ | |
| "PractitionerRole"\ | |
| "Encounter"\ | |
| "AllergyIntolerance"\ | |
| "Condition"\ | |
| "Immunization"\ | |
| "Observation"\ | |
| "Procedure"\ | |
| "Medication"\ | |
| "MedicationRequest") &&\ | |
| for resource in $resources | |
| do | |
| echo $resource && /tmp/Csv2FhirMapping-linux-arm64-binaries/Csv2Fhir $resource "../testdata-csv/AU Core Sample Data - ${resource}.csv" ../generated/ | |
| done | |
| - name: Create Pull Request | |
| uses: peter-evans/create-pull-request@v6 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| delete-branch: true | |
| commit-message: Update test data | |
| title: Update test data | |
| body: New updates from ${{ github.event.inputs.xlsFile }} | |
| labels: automated-pr | |
| base: master |