c2c_sim is a pipeline for simulating cell-cell interaction dynamics across contexts (e.g., time). See the Tutorial to get started
- clone the repo and create the environment using the .yml file
git clone [email protected]:hmbaghdassarian/c2c_sim.git
cd c2c_sim
conda env create -n c2c_sim --file=c2c_sim.yml
conda activate c2c_sim
- with your environment activated, install StabEco following the installation instructions. First try installing the specific version package was written from using devtools, otherwise can try installing with either remotes or devtools:
Option 1:
devtools::install_github("keepsimpler/StabEco@fe71129dda26db1a0578557808960460e09201f6")
Option 2:
remotes::install_github("keepsimpler/StabEco")
Option 3:
devtools::install_github("keepsimpler/StabEco")
- Explore directory shows simulation analyses related to https://doi.org/10.1101/2021.09.20.461129. Fully reproducible runs can be found at https://doi.org/10.24433/CO.0051950.v1