Skip to content

Commit

Permalink
update container
Browse files Browse the repository at this point in the history
  • Loading branch information
gmauro committed Apr 3, 2024
1 parent 15373c1 commit 05db38c
Showing 1 changed file with 7 additions and 8 deletions.
15 changes: 7 additions & 8 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
FROM condaforge/mambaforge:latest
LABEL io.github.snakemake.containerized="true"
LABEL io.github.snakemake.conda_env_hash="863a7181b5107fe791d421b9bb8ceedb03b5ba072875a7becaf3cb11b27c9278"
LABEL io.github.snakemake.conda_env_hash="4d3c90be68c3937f263e5072be1470fc478dfe58a9c3aff38463fb8fb03b31bf"

ENV DEBIAN_FRONTEND=noninteractive
RUN apt update && apt install -y build-essential libz-dev && rm -rf /var/lib/apt/lists/*
Expand Down Expand Up @@ -112,27 +112,26 @@ COPY workflow/envs/susier.yml /conda-envs/be316e9967fe3846694829a2f8f63147/envir

# Conda environment:
# source: workflow/scripts/gwaspipe/environment.yml
# prefix: /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e
# prefix: /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8
# name: gwaspipe
# channels:
# - conda-forge
# - defaults
# dependencies:
# - python<=3.10
# - pip==23.3.2
# - pip==24
# - mscorefonts
# - pip:
# - gwaslab==3.4.38
# - gwaslab==3.4.43
# - pandas==2.2
# - pyarrow==15.0
# - ruamel.yaml==0.18.5
# - click==8.1.7
# - loguru==0.7.2
# - cloup==3.0.4
# - mpmath==1.3.0
# - pybedtools==0.9.1
RUN mkdir -p /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e
COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e/environment.yaml
RUN mkdir -p /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8
COPY workflow/scripts/gwaspipe/environment.yml /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8/environment.yaml

# Step 2: Generate conda environments

Expand All @@ -142,5 +141,5 @@ RUN mamba env create --prefix /conda-envs/6e056d31662ab0bd2fd3fba49416042f --fil
mamba env create --prefix /conda-envs/a9b8ccc53333def92898879edc6df0ca --file /conda-envs/a9b8ccc53333def92898879edc6df0ca/environment.yaml && \
mamba env create --prefix /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05 --file /conda-envs/fd0f8d28d055274e6ce4cf006d07ec05/environment.yaml && \
mamba env create --prefix /conda-envs/be316e9967fe3846694829a2f8f63147 --file /conda-envs/be316e9967fe3846694829a2f8f63147/environment.yaml && \
mamba env create --prefix /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e --file /conda-envs/ab67c3cfb8e1a5ad9d9cb7824966853e/environment.yaml && \
mamba env create --prefix /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8 --file /conda-envs/d3af165ce1ac53aefab55f833f2ce3d8/environment.yaml && \
mamba clean --all -y

0 comments on commit 05db38c

Please sign in to comment.