Major refactoring of sampled_indicators #1784
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name: xHydro Testing Suite | |
on: | |
push: | |
branches: | |
- main | |
paths-ignore: | |
- .cruft.json | |
- CHANGELOG.rst | |
- README.rst | |
- pyproject.toml | |
- tests/test_xhydro.py | |
- src/xhydro/__init__.py | |
pull_request: | |
types: | |
- opened | |
- reopened | |
- synchronize | |
- labeled | |
- unlabeled | |
pull_request_review: | |
types: | |
- submitted | |
- edited | |
concurrency: | |
# For a given workflow, if we push to the same branch, cancel all previous builds on that branch except on master. | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} | |
permissions: | |
contents: read | |
jobs: | |
lint: | |
name: Lint (Python${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
if: | | |
((github.event_name == 'pull_request') && (github.event.action != 'labeled')) || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
strategy: | |
matrix: | |
python-version: | |
- "3.x" | |
steps: | |
- name: Harden Runner | |
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
with: | |
disable-sudo: true | |
egress-policy: block | |
allowed-endpoints: > | |
files.pythonhosted.org:443 | |
github.com:443 | |
pypi.org:443 | |
- name: Checkout Repository | |
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
- name: Set up Python${{ matrix.python-version }} | |
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: pip | |
- name: Install CI libraries | |
run: | | |
python -m pip install --require-hashes -r CI/requirements_ci.txt | |
- name: Environment Caching | |
uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4.1.2 | |
with: | |
path: .tox | |
key: ${{ matrix.os }}-Python${{ matrix.python-version }}-${{ hashFiles('pyproject.toml', 'tox.ini') }} | |
- name: Run linting suite | |
run: | | |
python -m tox -e lint | |
test-preliminary: | |
name: Preliminary Tests (Python${{ matrix.python-version }}, ${{ matrix.os }}) | |
needs: lint | |
if: | | |
(github.event_name == 'pull_request') && !contains(github.event.pull_request.labels.*.name, 'approved') | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ 'ubuntu-latest' ] | |
python-version: [ "3.10" ] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Harden Runner | |
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
with: | |
disable-sudo: true | |
egress-policy: block | |
allowed-endpoints: > | |
ai4edataeuwest.blob.core.windows.net:443 | |
cdn.proj.org:443 | |
conda.anaconda.org:443 | |
elevationeuwest.blob.core.windows.net:443 | |
files.pythonhosted.org:443 | |
github.com:443 | |
objects.githubusercontent.com:443 | |
planetarycomputer.microsoft.com:443 | |
pypi.org:443 | |
raw.githubusercontent.com:443 | |
s3.us-east-2.wasabisys.com:443 | |
s3.wasabisys.com:443 | |
- name: Checkout Repository | |
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
uses: mamba-org/setup-micromamba@617811f69075e3fd3ae68ca64220ad065877f246 # v2.0.0 | |
with: | |
cache-downloads: true | |
cache-environment: false | |
environment-file: environment-dev.yml | |
create-args: >- | |
python=${{ matrix.python-version }} | |
micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
- name: Install xHydro | |
run: | | |
python -m pip install --no-deps . | |
- name: Check versions | |
run: | | |
micromamba list | |
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
python -m pip check || true | |
- name: Test with pytest | |
run: | | |
make test | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
test-conda: | |
name: Test with Python${{ matrix.python-version }} (Anaconda, ${{ matrix.os }}) | |
needs: lint | |
if: | | |
contains(github.event.pull_request.labels.*.name, 'approved') || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ 'ubuntu-latest' ] | |
python-version: [ "3.10", "3.11", "3.12" ] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Harden Runner | |
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
with: | |
disable-sudo: true | |
egress-policy: block | |
allowed-endpoints: > | |
ai4edataeuwest.blob.core.windows.net:443 | |
cdn.proj.org:443 | |
conda.anaconda.org:443 | |
coveralls.io:443 | |
elevationeuwest.blob.core.windows.net:443 | |
files.pythonhosted.org:443 | |
github.com:443 | |
objects.githubusercontent.com:443 | |
planetarycomputer.microsoft.com:443 | |
pypi.org:443 | |
raw.githubusercontent.com:443 | |
s3.us-east-2.wasabisys.com:443 | |
s3.wasabisys.com:443 | |
- name: Checkout Repository | |
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
uses: mamba-org/setup-micromamba@617811f69075e3fd3ae68ca64220ad065877f246 # v2.0.0 | |
with: | |
cache-downloads: true | |
cache-environment: false | |
environment-file: environment-dev.yml | |
create-args: >- | |
lmoments3 | |
python=${{ matrix.python-version }} | |
micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
- name: Install xHydro | |
run: | | |
python -m pip install --no-deps . | |
- name: Check versions | |
run: | | |
micromamba list | |
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
python -m pip check || true | |
- name: Test with pytest | |
run: | | |
python -m pytest --cov xhydro | |
- name: Report Coverage | |
run: | | |
python -m coveralls | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: run-Python${{ matrix.python-version }}-conda | |
COVERALLS_PARALLEL: true | |
COVERALLS_SERVICE_NAME: github | |
test-notebooks: | |
name: Test Notebooks (Python${{ matrix.python-version }}, ${{ matrix.os }}) | |
needs: lint | |
if: | | |
contains(github.event.pull_request.labels.*.name, 'notebooks') || | |
contains(github.event.pull_request.labels.*.name, 'approved') || | |
(github.event.review.state == 'approved') || | |
(github.event_name == 'push') | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ 'ubuntu-latest' ] | |
python-version: [ "3.10", "3.11", "3.12" ] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Harden Runner | |
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
with: | |
disable-sudo: true | |
egress-policy: block | |
allowed-endpoints: > | |
ai4edataeuwest.blob.core.windows.net:443 | |
cdn.proj.org:443 | |
conda.anaconda.org:443 | |
elevationeuwest.blob.core.windows.net:443 | |
files.pythonhosted.org:443 | |
github.com:443 | |
objects.githubusercontent.com:443 | |
planetarycomputer.microsoft.com:443 | |
pypi.org:443 | |
raw.githubusercontent.com:443 | |
s3.us-east-2.wasabisys.com:443 | |
s3.wasabisys.com:443 | |
- name: Checkout Repository | |
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
- name: Setup Conda (Micromamba) with Python${{ matrix.python-version }} | |
uses: mamba-org/setup-micromamba@v2 | |
with: | |
cache-downloads: true | |
cache-environment: false | |
environment-file: environment-dev.yml | |
create-args: >- | |
lmoments3 | |
python=${{ matrix.python-version }} | |
micromamba-version: "1.5.10-0" # pinned to avoid the breaking changes with mamba and micromamba (2.0.0). | |
- name: Install xHydro | |
run: | | |
python -m pip install --no-deps . | |
- name: Check versions | |
run: | | |
micromamba list | |
echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
python -m pip check || true | |
- name: Test Notebooks | |
run: | | |
make test-notebooks-lax | |
# test-ESMF-source: | |
# name: Tests using ESMF from sources (Python${{ matrix.python-version }}) | |
# needs: lint | |
# if: | | |
# contains(github.event.pull_request.labels.*.name, 'approved') || | |
# (github.event.review.state == 'approved') || | |
# (github.event_name == 'push') | |
# runs-on: ubuntu-latest | |
# env: | |
# ESMF_VERSION: "v8.5.0" | |
# strategy: | |
# matrix: | |
# include: | |
# - python-version: "3.9" | |
# steps: | |
# - uses: actions/[email protected] | |
# - name: Install NetCDF | |
# run: | | |
# sudo apt-get -y update | |
# sudo apt install libnetcdf-dev libnetcdff-dev | |
# - name: Install ESMF | |
# uses: esmf-org/install-esmf-action@v1 | |
# env: | |
# ESMF_NETCDF: nc-config | |
# with: | |
# cache: true | |
# version: ${{ env.ESMF_VERSION }} | |
# - name: Set up Python${{ matrix.python-version }} | |
# uses: actions/[email protected] | |
# with: | |
# python-version: ${{ matrix.python-version }} | |
# - name: Install xhydro (with esmpy) | |
# run: | | |
# python -m pip install flit | |
# make dev | |
# env: | |
# ESMF_VERSION: ${{ env.ESMF_VERSION }} | |
# - name: Check versions | |
# run: | | |
# python -m pip list | |
# echo ESMF_VERSION=$(cat $ESMFMKFILE | grep "ESMF_VERSION_STRING=" | awk -F= '{print $2}' | tr -d "'") | |
# python -m pip check || true | |
# - name: Test with pytest | |
# run: | | |
# make test | |
# env: | |
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
finish: | |
needs: | |
- test-conda | |
- test-notebooks | |
runs-on: ubuntu-latest | |
steps: | |
- name: Harden Runner | |
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1 | |
with: | |
disable-sudo: true | |
egress-policy: audit | |
- name: Coveralls Finished | |
uses: coverallsapp/github-action@cfd0633edbd2411b532b808ba7a8b5e04f76d2c8 # v2.3.4 | |
with: | |
parallel-finished: true |