map-ir-gp-stack

The goal of map-ir-gp-stack is to tidy up the original code from https://github.com/pahanc/Mapping-insecticide-resistance into a pipeline of sorts so we can reuse it.

I've rearranged the repository to help me with this process.

I will write down notes here to discuss the overall restructuring and reasons why.

• GP meta-model has been renamed gp-meta-model to avoid spaced and ahve consistent lowercase.
• put all analysis code into an analysis directory. This is to help separate out the inputs and outputs, and also so this README file is the first one the user sees. Mostly cosmetic.
• There is some really nice demo code inside each of the models, which run in a short time period. These are being moved into demo directory:

analysis
|- README.md
|- bgam/
|- rf/
|- xgb/
|- gp-meta-model/
|- demo/
  |- bgam/
  |- rf/
  |- xgb/
  |- gp-meta-model/