v3.1.0

What's Changed

• 1908 : HtsgetReader should not send HTSGet ticket server headers in data server requests by @andaca in #1909
• fix none windowFunction for wig track in bedgraph format by @1pratham in #1910
• Color scale & heatmap wig track graph type options by @jrobinso in #1915
• Bug fix for setting onlyHandleClicksForHighlightedSamples in gCNV track by @jethror1 in #1917

New Contributors

• @andaca made their first contribution in #1909
• @1pratham made their first contribution in #1910

Full Changelog: v3.0.9...v3.1.0

3.0.8

What's Changed

• BigWig track: Add none window Function by @nivm in #1899

• Bug fix - float values in BAM tags not parsed correctly (#1901)

New Contributors

• @nivm made their first contribution in #1899

Full Changelog: v3.0.7...v3.0.8

v3.0.7

What's Changed

• Bug fix: Save SVG image did not work if alignment tracks was grouped.
• Bug fix: Base modifications did not display properly for CRAM files. Issue #1895

Full Changelog: v3.0.6...v3.0.7

v3.0.6

What's Changed

• Fixed bug in feature search logic - "name" field of bed files was not searched.

Full Changelog: v3.0.5...v3.0.6

3.0.5

Bug Fixes

• Some actions could trigger loading large regions of indexed files, including bams and crams, prematurely freezing the browser.

• Fix ROI deletion feature by @milandomazet in #1880

Full Changelog: v3.0.4...v3.0.5

v3.0.4

Bug Fixes

• Adjust location of feature name after panning left and right

Full Changelog: v3.0.3...v3.0.4

v3.0.3

Bug Fixes

• Fixed bug in ROI top margin when ideogram and/or ruler are hidden by @milandomazet in #1876

New Features

• Added ROI Set name to the ROI menu by @milandomazet in #1875
• Add log scale feature to negative values in WIG track by @milandomazet in #1873

Full Changelog: v3.0.2...v3.0.3

v3.0.2

Bug fixes

• Merged track issues by @jrobinso in #1866
• Fix Merged track popup bug by @milandomazet in #1869
• Fix htsget missing chrAliasTable and decoding header after data fetch by @jmgenomics in #1872

New Contributors

• @jmgenomics made their first contribution in #1872

Full Changelog: v3.0.1...v3.0.2

3.0.1

What's Changed

Bug Fixes

• Fixed bug preventing coverage track from showing nucleotide mismatch pileups.
• Fixed problems loading from data URIs.
• Fixed problems creating SVG and PNG images.

Full Changelog: v3.0.0...v3.0.1

3.0.0

What's New

Major release with many new features

• Support for UCSC GenArk hub assemblies
• Support for twobit sequence format
• Support for Genbank (.gbk) files
• Visualization of read base modifications for BAM/CRAM files with MM/ML tags.
• Group alignments by various attributes
• New sample information visualization
• Many new coloring options for VCF and GFF files
• New XQTL track
• Jump to next and previous feature with hot keys (F & B)
• CRAM optimizations
• GWAS optimizations
• Support for bedMethyl format