Additional quality control applied to the published OneK1K dataset as presented in Supplementary Text 2 of Joyce B. Kang, Amber Z. Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar, Cristian Valencia, Kaitlyn Lagattuta, Fan Zhang, Anna Helena Jonsson, Seyhan Yazar, Jose Alquicira-Hernandez, Hamed Khalili, Ashwin N. Ananthakrishnan, Karthik Jagadeesh, Kushal Dey, Accelerating Medicines Partnership Program: Rheumatoid Arthritis and Systemic Lupus Erythematosus (AMP RA/SLE) Network, Mark J. Daly, Ramnik J. Xavier, Laura T. Donlin, Jennifer H. Anolik, Joseph E. Powell, Deepak A. Rao, Michael B. Brenner, Maria Gutierrez-Arcelus, Soumya Raychaudhuri. Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. medRxiv 2023.03.14.23287257; doi: https://doi.org/10.1101/2023.03.14.23287257
The cells-by-features table described in Supplementary Text 2 (included in this repo as "OneK1K_Doublet_Removal_Report.pdf”) and indexed by cell barcode is available here as “cell_meta.csv.” This table can be used for filtering cells from the published OneK1K dataset to achieve the same QC described here.