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renv restore test #2

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Sep 30, 2024
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26 changes: 17 additions & 9 deletions renv.lock
Original file line number Diff line number Diff line change
Expand Up @@ -416,7 +416,9 @@
"Package": "checklist",
"Version": "0.4.0",
"Source": "Repository",
"Repository": "inbo",
"Repository": "https://inbo.r-universe.dev",
"RemoteUrl": "https://github.com/inbo/checklist",
"RemoteSha": "5649985b58693acb88337873ae14a7d5bc018d96",
"Requirements": [
"R",
"R6",
Expand Down Expand Up @@ -511,7 +513,9 @@
"Package": "codemetar",
"Version": "0.3.5",
"Source": "Repository",
"Repository": "inbo",
"Repository": "https://inbo.r-universe.dev",
"RemoteUrl": "https://github.com/ropensci/codemetar",
"RemoteSha": "f05d72aeae75682a3c88ff976311fcfe118df29d",
"Requirements": [
"R",
"cli",
Expand Down Expand Up @@ -1337,7 +1341,9 @@
"Package": "inborutils",
"Version": "0.4.0",
"Source": "Repository",
"Repository": "inbo",
"Repository": "https://inbo.r-universe.dev",
"RemoteUrl": "https://github.com/inbo/inborutils",
"RemoteSha": "1bfb7405a58022e8a3b7cf9b97a5c14a9a958d7e",
"Requirements": [
"DBI",
"R",
Expand Down Expand Up @@ -1601,14 +1607,16 @@
"Package": "lubridate",
"Version": "1.9.3.9000",
"Source": "Repository",
"Repository": "inbo",
"Repository": "https://inbo.r-universe.dev",
"RemoteUrl": "https://github.com/tidyverse/lubridate",
"RemoteSha": "2f3ab321511ac28ab95f729c8fa36fb9170994ea",
"Requirements": [
"R",
"generics",
"methods",
"timechange"
],
"Hash": "eaf995f56a3d6ffcac77e853603371ff"
"Hash": "77778d7c6a58ec25c9e9be32965a819d"
},
"magrittr": {
"Package": "magrittr",
Expand Down Expand Up @@ -2193,13 +2201,13 @@
},
"renv": {
"Package": "renv",
"Version": "1.0.7",
"Version": "1.0.9",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"utils"
],
"Hash": "397b7b2a265bc5a7a06852524dabae20"
"Hash": "ef233f0e9064fc88c898b340c9add5c2"
},
"rex": {
"Package": "rex",
Expand Down Expand Up @@ -2406,7 +2414,7 @@
},
"sf": {
"Package": "sf",
"Version": "1.0-16",
"Version": "1.0-17",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
Expand All @@ -2425,7 +2433,7 @@
"units",
"utils"
],
"Hash": "ad57b543f7c3fca05213ba78ff63df9b"
"Hash": "453a7d0263eae87a7831242a74fe9b60"
},
"shiny": {
"Package": "shiny",
Expand Down
105 changes: 96 additions & 9 deletions renv/activate.R
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
local({

# the requested version of renv
version <- "1.0.7"
version <- "1.0.9"
attr(version, "sha") <- NULL

# the project directory
Expand Down Expand Up @@ -98,6 +98,66 @@ local({
unloadNamespace("renv")

# load bootstrap tools
ansify <- function(text) {
if (renv_ansify_enabled())
renv_ansify_enhanced(text)
else
renv_ansify_default(text)
}

renv_ansify_enabled <- function() {

override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA)
if (!is.na(override))
return(as.logical(override))

pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA)
if (identical(pane, "build"))
return(FALSE)

testthat <- Sys.getenv("TESTTHAT", unset = "false")
if (tolower(testthat) %in% "true")
return(FALSE)

iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false")
if (tolower(iderun) %in% "false")
return(FALSE)

TRUE

}

renv_ansify_default <- function(text) {
text
}

renv_ansify_enhanced <- function(text) {

# R help links
pattern <- "`\\?(renv::(?:[^`])+)`"
replacement <- "`\033]8;;ide:help:\\1\a?\\1\033]8;;\a`"
text <- gsub(pattern, replacement, text, perl = TRUE)

# runnable code
pattern <- "`(renv::(?:[^`])+)`"
replacement <- "`\033]8;;ide:run:\\1\a\\1\033]8;;\a`"
text <- gsub(pattern, replacement, text, perl = TRUE)

# return ansified text
text

}

renv_ansify_init <- function() {

envir <- renv_envir_self()
if (renv_ansify_enabled())
assign("ansify", renv_ansify_enhanced, envir = envir)
else
assign("ansify", renv_ansify_default, envir = envir)

}

`%||%` <- function(x, y) {
if (is.null(x)) y else x
}
Expand Down Expand Up @@ -142,7 +202,10 @@ local({
# compute common indent
indent <- regexpr("[^[:space:]]", lines)
common <- min(setdiff(indent, -1L)) - leave
paste(substring(lines, common), collapse = "\n")
text <- paste(substring(lines, common), collapse = "\n")

# substitute in ANSI links for executable renv code
ansify(text)

}

Expand Down Expand Up @@ -306,7 +369,11 @@ local({
)

if ("headers" %in% names(formals(utils::download.file)))
args$headers <- renv_bootstrap_download_custom_headers(url)
{
headers <- renv_bootstrap_download_custom_headers(url)
if (length(headers) && is.character(headers))
args$headers <- headers
}

do.call(utils::download.file, args)

Expand Down Expand Up @@ -385,10 +452,22 @@ local({
for (type in types) {
for (repos in renv_bootstrap_repos()) {

# build arguments for utils::available.packages() call
args <- list(type = type, repos = repos)

# add custom headers if available -- note that
# utils::available.packages() will pass this to download.file()
if ("headers" %in% names(formals(utils::download.file)))
{
headers <- renv_bootstrap_download_custom_headers(url)
if (length(headers) && is.character(headers))
args$headers <- headers
}

# retrieve package database
db <- tryCatch(
as.data.frame(
utils::available.packages(type = type, repos = repos),
do.call(utils::available.packages, args),
stringsAsFactors = FALSE
),
error = identity
Expand Down Expand Up @@ -470,23 +549,31 @@ local({

}

renv_bootstrap_github_token <- function() {
for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) {
envval <- Sys.getenv(envvar, unset = NA)
if (!is.na(envval))
return(envval)
}
}

renv_bootstrap_download_github <- function(version) {

enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE")
if (!identical(enabled, "TRUE"))
return(FALSE)

# prepare download options
pat <- Sys.getenv("GITHUB_PAT")
if (nzchar(Sys.which("curl")) && nzchar(pat)) {
token <- renv_bootstrap_github_token()
if (nzchar(Sys.which("curl")) && nzchar(token)) {
fmt <- "--location --fail --header \"Authorization: token %s\""
extra <- sprintf(fmt, pat)
extra <- sprintf(fmt, token)
saved <- options("download.file.method", "download.file.extra")
options(download.file.method = "curl", download.file.extra = extra)
on.exit(do.call(base::options, saved), add = TRUE)
} else if (nzchar(Sys.which("wget")) && nzchar(pat)) {
} else if (nzchar(Sys.which("wget")) && nzchar(token)) {
fmt <- "--header=\"Authorization: token %s\""
extra <- sprintf(fmt, pat)
extra <- sprintf(fmt, token)
saved <- options("download.file.method", "download.file.extra")
options(download.file.method = "wget", download.file.extra = extra)
on.exit(do.call(base::options, saved), add = TRUE)
Expand Down