CI Python #674
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| name: CI Python | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| schedule: | |
| - cron: '30 5 * * *' | |
| jobs: | |
| ci-python: | |
| strategy: | |
| matrix: | |
| packageDirectory: ["interpret_community"] | |
| operatingSystem: [ubuntu-latest] | |
| pythonVersion: [3.7, 3.8, 3.9] | |
| runs-on: ${{ matrix.operatingSystem }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.pythonVersion }} | |
| - name: Install numpy | |
| shell: bash -l {0} | |
| run: | | |
| conda install --yes --quiet numpy==1.19.5 -c conda-forge | |
| - if: ${{ matrix.operatingSystem != 'macos-latest' }} | |
| name: Install pytorch on non-MacOS | |
| shell: bash -l {0} | |
| run: | | |
| conda install --yes --quiet pytorch torchvision captum cpuonly -c pytorch | |
| - if: ${{ matrix.operatingSystem == 'macos-latest' }} | |
| name: Install Anaconda packages on MacOS, which should not include cpuonly according to official docs | |
| shell: bash -l {0} | |
| run: | | |
| conda install --yes --quiet pytorch torchvision captum -c pytorch | |
| - if: ${{ matrix.operatingSystem == 'macos-latest' }} | |
| name: Install lightgbm from conda on MacOS | |
| shell: bash -l {0} | |
| run: | | |
| conda install --yes -c conda-forge lightgbm | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: | | |
| pip install -e ./python | |
| - name: Install dev dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install -r requirements-dev.txt | |
| - name: Install visualization dependencies | |
| shell: bash -l {0} | |
| # install scikit-learn to workaround raiwidgets dependency | |
| run: | | |
| pip install raiwidgets | |
| pip install -r requirements-vis.txt | |
| pip install --upgrade scikit-learn | |
| pip install --upgrade "shap<=0.42.1" | |
| - name: Install test dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install -r requirements-test.txt | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pytest ./tests -m "not notebooks" -s -v --cov=${{ matrix.packageDirectory }} --cov-report=xml --cov-report=html | |
| - name: Upload code coverage results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ matrix.packageDirectory }}-code-coverage-results | |
| path: htmlcov | |
| # Use always() to always run this step to publish test results when there are test failures | |
| if: ${{ always() }} | |
| - if: ${{ matrix.pythonVersion == '3.8' }} | |
| name: Upload to codecov | |
| id: codecovupload1 | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: . | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| path_to_write_report: ./coverage/codecov_report.txt | |
| verbose: true | |
| - if: ${{ (steps.codecovupload1.outcome == 'failure') && (matrix.pythonVersion == '3.8') }} | |
| name: Retry upload to codecov | |
| id: codecovupload2 | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: . | |
| env_vars: OS,PYTHON | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| path_to_write_report: ./coverage/codecov_report.txt | |
| verbose: true | |
| - if: ${{ matrix.pythonVersion == '3.8' }} | |
| name: Set codecov status | |
| shell: bash | |
| run: | | |
| if ${{ (steps.codecovupload1.outcome == 'success') || (steps.codecovupload2.outcome == 'success') }} ; then | |
| echo fine | |
| else | |
| exit 1 | |
| fi |