Merge pull request #47 from martinghunt/bug_fix_long_seq_rep_numbers

Bug fix long seq rep numbers
iqbal-lab-org · Aug 1, 2018 · 365efc2 · 365efc2
2 parents 19ccfc8 + 4b69ddf
commit 365efc2
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diff --git a/db_schema_patches/2_to_3.sql b/db_schema_patches/2_to_3.sql
@@ -0,0 +1,4 @@
+# Updates schema from version 2 to version 3
+ALTER TABLE Seqrep MODIFY sequence_replicate_number BIGINT UNSIGNED;
+UPDATE Version SET version=3 WHERE version=2;
+
diff --git a/python/clockwork/db_schema.py b/python/clockwork/db_schema.py
@@ -1,4 +1,4 @@
-version = 2
+version = 3
 
 tables = {
     'Isolate': [
@@ -99,7 +99,7 @@
     'Seqrep': [
         ('seqrep_id', 'integer'),
         ('isolate_id', 'integer'),
-        ('sequence_replicate_number', 'integer'),
+        ('sequence_replicate_number', 'bigint unsigned'),
         ('original_reads_file_1_md5', 'text'),
         ('original_reads_file_2_md5', 'text'),
         ('remove_contam_reads_file_1_md5', 'text'),