Skip to content

Issues: iqbal-lab/cortex

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

15 Open 10 Closed
15 Open 10 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

make: *** [Makefile:29: src/alignment_cmdline.o] Error 1
#31 opened Jul 25, 2022 by kdyoung100
Bump up seq_file dependency
#28 opened Mar 1, 2021 by bricoletc
System-wide htslib can fail linkage
#26 opened May 6, 2020 by bricoletc
1
Cortex not outputting empty VCF when genotyped calls file is empty
#25 opened Apr 7, 2020 by iqbal-lab
Possible precedence issue with control flow operator
#24 opened Dec 16, 2019 by iqbal-lab
@iqbal-lab
make MAXK=31 NUM_COLS=1 cortex_var
#22 opened Jul 25, 2018 by EmilyWesel
5
Running the run_calls wrapper with different numbers of samples produces different SNPs
#17 opened Sep 24, 2017 by bioinfo11
1
In function print_usage': nw_cmdline.c undefined reference to string_buff_strlen'
#15 opened Mar 24, 2016 by tseemann
5
wrong ref allele given in vcf of calls
#14 opened Feb 10, 2016 by rmcolq
run_indep_wkflow_with_gnu_par hangs after parallel build step before combine
#12 opened Feb 1, 2016 by rmcolq
7
Fix known bugs in genotyping and look at confidence distribution
#11 opened Nov 17, 2015 by iqbal-lab
@iqbal-lab
6
missing / / in run_indep_wkflow_with_gnu_par.pl
#9 opened Sep 13, 2015 by hcdenbakker
problem with run_indep_wkflow_with_gnu_par.pl
#7 opened Sep 11, 2015 by hcdenbakker
8
Improve mem height/width estimation in run_indep_workflow...
#5 opened Sep 10, 2015 by iqbal-lab
4
Modify run-calls to delete working files at the end
#1 opened Feb 13, 2015 by iqbal-lab
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.