Merge pull request #105 from itsdfish/update_dependencies

Update dependencies
itsdfish · Nov 11, 2024 · 8e709ec · 8e709ec
2 parents 871d6f8 + 28c19a7
commit 8e709ec
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diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -16,7 +16,7 @@ jobs:
       matrix:
         version:
           - '1.9' # Replace this with the minimum Julia version that your package supports. E.g. if your package requires Julia 1.5 or higher, change this to '1.5'.
-          - 'nightly'
+          #- 'nightly'
         os:
           - ubuntu-latest
         arch:

diff --git a/.github/workflows/benchmark_pr.yml b/.github/workflows/benchmark_pr.yml
@@ -4,75 +4,80 @@ on:
   pull_request_target:
     branches:
       - master
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
 
 permissions:
   pull-requests: write
 
 jobs:
-    generate_plots:
-        runs-on: ubuntu-latest
+  generate_plots:
+    runs-on: ubuntu-latest
 
-        steps:
-            - uses: actions/checkout@v2
-            - uses: julia-actions/setup-julia@v1
-              with:
-                version: "1.9"
-            - uses: julia-actions/cache@v1
-            - name: Extract Package Name from Project.toml
-              id: extract-package-name
-              run: |
-                PACKAGE_NAME=$(grep "^name" Project.toml | sed 's/^name = "\(.*\)"$/\1/')
-                echo "::set-output name=package_name::$PACKAGE_NAME"
-            - name: Build AirspeedVelocity
-              env:
-                JULIA_NUM_THREADS: 2
-              run: |
-                # Lightweight build step, as sometimes the runner runs out of memory:
-                julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.add(;url="https://github.com/MilesCranmer/AirspeedVelocity.jl.git")'
-                julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.build("AirspeedVelocity")'
-            - name: Add ~/.julia/bin to PATH
-              run: |
-                echo "$HOME/.julia/bin" >> $GITHUB_PATH
-            - name: Run benchmarks
-              run: |
-                echo $PATH
-                ls -l ~/.julia/bin
-                mkdir results
-                benchpkg ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --url=${{ github.event.repository.clone_url }} --bench-on="${{github.event.repository.default_branch}}" --output-dir=results/ --tune
-            - name: Create plots from benchmarks
-              run: |
-                mkdir -p plots
-                benchpkgplot ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --npart=10 --format=png --input-dir=results/ --output-dir=plots/
-            - name: Upload plot as artifact
-              uses: actions/upload-artifact@v2
-              with:
-                name: plots
-                path: plots
-            - name: Create markdown table from benchmarks
-              run: |
-                benchpkgtable ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --input-dir=results/ --ratio > table.md
-                echo '### Benchmark Results' > body.md
-                echo '' >> body.md
-                echo '' >> body.md
-                cat table.md >> body.md
-                echo '' >> body.md
-                echo '' >> body.md
-                echo '### Benchmark Plots' >> body.md
-                echo 'A plot of the benchmark results have been uploaded as an artifact to the workflow run for this PR.' >> body.md
-                echo 'Go to "Actions"->"Benchmark a pull request"->[the most recent run]->"Artifacts" (at the bottom).' >> body.md
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: "1.9"
+      - uses: julia-actions/cache@v2
+      - name: Extract Package Name from Project.toml
+        id: extract-package-name
+        run: |
+          PACKAGE_NAME=$(grep "^name" Project.toml | sed 's/^name = "\(.*\)"$/\1/')
+          echo "::set-output name=package_name::$PACKAGE_NAME"
+      - name: Build AirspeedVelocity
+        env:
+          JULIA_NUM_THREADS: 2
+        run: |
+          # Lightweight build step, as sometimes the runner runs out of memory:
+          julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.add(;url="https://github.com/MilesCranmer/AirspeedVelocity.jl.git")'
+          julia -e 'ENV["JULIA_PKG_PRECOMPILE_AUTO"]=0; import Pkg; Pkg.build("AirspeedVelocity")'
+      - name: Add ~/.julia/bin to PATH
+        run: |
+          echo "$HOME/.julia/bin" >> $GITHUB_PATH
+      - name: Run benchmarks
+        run: |
+          echo $PATH
+          ls -l ~/.julia/bin
+          mkdir results
+          benchpkg ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --url=${{ github.event.repository.clone_url }} --bench-on="${{github.event.pull_request.head.sha}}" --output-dir=results/ --exeflags="-O3 --threads=auto"
+      - name: Create plots from benchmarks
+        run: |
+          mkdir -p plots
+          benchpkgplot ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --npart=10 --format=png --input-dir=results/ --output-dir=plots/
+      - name: Upload plot as artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: plots
+          path: plots
+      - name: Create markdown table from benchmarks
+        run: |
+          benchpkgtable ${{ steps.extract-package-name.outputs.package_name }} --rev="${{github.event.repository.default_branch}},${{github.event.pull_request.head.sha}}" --input-dir=results/ --ratio > table.md
+          echo '### Benchmark Results' > body.md
+          echo '' >> body.md
+          echo '' >> body.md
+          cat table.md >> body.md
+          echo '' >> body.md
+          echo '' >> body.md
+          echo '### Benchmark Plots' >> body.md
+          echo 'A plot of the benchmark results have been uploaded as an artifact to the workflow run for this PR.' >> body.md
+          echo 'Go to "Actions"->"Benchmark a pull request"->[the most recent run]->"Artifacts" (at the bottom).' >> body.md
 
-            - name: Find Comment
-              uses: peter-evans/find-comment@v2
-              id: fcbenchmark
-              with:
-                issue-number: ${{ github.event.pull_request.number }}
-                comment-author: 'github-actions[bot]'
-                body-includes: Benchmark Results
+      - name: Find Comment
+        uses: peter-evans/find-comment@v3
+        id: fcbenchmark
+        with:
+          issue-number: ${{ github.event.pull_request.number }}
+          comment-author: "github-actions[bot]"
+          body-includes: Benchmark Results
 
-            - name: Comment on PR
-              uses: peter-evans/create-or-update-comment@v3
-              with:
-                comment-id: ${{ steps.fcbenchmark.outputs.comment-id }}
-                issue-number: ${{ github.event.pull_request.number }}
-                body-path: body.md
-                edit-mode: replace
+      - name: Comment on PR
+        uses: peter-evans/create-or-update-comment@v4
+        with:
+          comment-id: ${{ steps.fcbenchmark.outputs.comment-id }}
+          issue-number: ${{ github.event.pull_request.number }}
+          body-path: body.md
+          edit-mode: replace
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "SequentialSamplingModels"
 uuid = "0e71a2a6-2b30-4447-8742-d083a85e82d1"
 authors = ["itsdfish"]
-version = "0.11.12"
+version = "0.11.13"
 
 [deps]
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
@@ -29,7 +29,7 @@ TuringExt = "Turing"
 
 [compat]
 Distributions = "v0.24.6, 0.25"
-DynamicPPL = "0.22.0,0.23.0,0.24.0,0.25,0.26.0,0.27,0.28.0,0.29.0"
+DynamicPPL = "0.22.0,0.23.0,0.24.0,0.25,0.26.0,0.27,0.28.0,0.29.0,0.30.0"
 FunctionZeros = "0.2.0,0.3.0, 1"
 HCubature = "1"
 Interpolations = "0.14.0,0.15.0"