GitHub - jamesjun/vistrack: Visual tracker for freely swimming electric fish (Len Maler lab)

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Visual tracker for freely swimming electric fish (Len Maler lab)

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Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
.gitignore		.gitignore
D2GaussFunction.m		D2GaussFunction.m
D2GaussFunctionRot.m		D2GaussFunctionRot.m
GUI.fig		GUI.fig
GUI.m		GUI.m
GUI1.m		GUI1.m
GUI_CUT.m		GUI_CUT.m
GUI_EODMOVIE.m		GUI_EODMOVIE.m
GUI_ESACCADES.m		GUI_ESACCADES.m
GUI_ESACPLOT.m		GUI_ESACPLOT.m
GUI_FLIP.m		GUI_FLIP.m
Gauss2DRotFit.m		Gauss2DRotFit.m
LOADSETTINGS.m		LOADSETTINGS.m
R12A2_Rs.mat		R12A2_Rs.mat
R12A2_Track.mat		R12A2_Track.mat
R12A2_Ts.mat		R12A2_Ts.mat
S02_imageAnalysis.m		S02_imageAnalysis.m
S130227_demoEOD_jove.m		S130227_demoEOD_jove.m
S130301_imageTracking.m		S130301_imageTracking.m
S130301_trackExample.m		S130301_trackExample.m
S130304_joveFigure.m		S130304_joveFigure.m
S130528_TRIMVIDEO.m		S130528_TRIMVIDEO.m
S130603_patch.m		S130603_patch.m
S130603_wavwrite.m		S130603_wavwrite.m
S130924_poolTrials.m		S130924_poolTrials.m
S140322_PoolTrialsEsac.m		S140322_PoolTrialsEsac.m
S140323_PoolTrialsEsac_Len.m		S140323_PoolTrialsEsac_Len.m
S140326_ESACanalysis.m		S140326_ESACanalysis.m
S140326_PoolTrialsEsac_ver3.m		S140326_PoolTrialsEsac_ver3.m
S140327_generateImageMask.m		S140327_generateImageMask.m
S140328_PoolTrialsEsac_Probe.m		S140328_PoolTrialsEsac_Probe.m
S140330_GridMapAnalysis.m		S140330_GridMapAnalysis.m
S140330_PoolTrials.m		S140330_PoolTrials.m
S140403_BarchiCorrelation.m		S140403_BarchiCorrelation.m
S140403_EODRperDist.m		S140403_EODRperDist.m
S140407_regionMask.m		S140407_regionMask.m
S140408_IPIperDist.m		S140408_IPIperDist.m
S140411_ExampleTrajectories.m		S140411_ExampleTrajectories.m
S140411_checkTrajectories.m		S140411_checkTrajectories.m
S140412_visitLocation.m		S140412_visitLocation.m
S140417_IPI_change_plot.m		S140417_IPI_change_plot.m
S140417_VAF.m		S140417_VAF.m
S140419_HeadingDirection.m		S140419_HeadingDirection.m
S140422_Gridmap_Control.m		S140422_Gridmap_Control.m
S140422_PoolTrials_Control.m		S140422_PoolTrials_Control.m
S140423_compositeBackground.m		S140423_compositeBackground.m
S140424_Background.m		S140424_Background.m
S140425_MSHfigures.m		S140425_MSHfigures.m
S140425_PlotTraject.m		S140425_PlotTraject.m
S140427_MapESAC.m		S140427_MapESAC.m
S140428_ESACmovie.m		S140428_ESACmovie.m
S140428_GaussFit.m		S140428_GaussFit.m
S140428_MovieOutput.m		S140428_MovieOutput.m
S140606_EscanPlot.m		S140606_EscanPlot.m
S141026_LearningCurve_Control.m		S141026_LearningCurve_Control.m
S141106_LearningCurve_Control.m		S141106_LearningCurve_Control.m
S150206_HeadingError_DistToLandmark.m		S150206_HeadingError_DistToLandmark.m
S150511_Matlab2Bin.m		S150511_Matlab2Bin.m
S150527_FractionTime.m		S150527_FractionTime.m
S150614_ErrorBarPlot.m		S150614_ErrorBarPlot.m
S150624_BackwardSwim.m		S150624_BackwardSwim.m
S160301_kwtest.m		S160301_kwtest.m
S180711_SyncTime.m		S180711_SyncTime.m
S180731_imagerank.m		S180731_imagerank.m
S180820_cuetrial.m		S180820_cuetrial.m
SCRIPT_CUSTOM.m		SCRIPT_CUSTOM.m
Trial.m		Trial.m
TrialGroup.m		TrialGroup.m
Untitled2.m		Untitled2.m
appendField.m		appendField.m
appendStruct.m		appendStruct.m
barplot_prop.m		barplot_prop.m
bootSEM.m		bootSEM.m
bootSemMean.m		bootSemMean.m
boxplot_cell.m		boxplot_cell.m
bwgetlargestblob.m		bwgetlargestblob.m
calcAngErr.m		calcAngErr.m
calcAngErrSign.m		calcAngErrSign.m
calcAreaFWHM.m		calcAreaFWHM.m
calcBinnedCV.m		calcBinnedCV.m
calcBinnedCV_multi.m		calcBinnedCV_multi.m
calcBootSem.m		calcBootSem.m
calcCorr.m		calcCorr.m
calcCorrTau.m		calcCorrTau.m
calcDist2Fish.m		calcDist2Fish.m
calcDistAsym.m		calcDistAsym.m
calcESAC.m		calcESAC.m
calcGrid.m		calcGrid.m
calcGridStats.m		calcGridStats.m
calcHistQuant.m		calcHistQuant.m
calcHistQuantSelect.m		calcHistQuantSelect.m
calcQshift.m		calcQshift.m
calcQuantileShift.m		calcQuantileShift.m
calcStatsAnimal.m		calcStatsAnimal.m
calcVAF.m		calcVAF.m
calcVelocity.m		calcVelocity.m
calcVisitCount.m		calcVisitCount.m
calcVisitDensity.m		calcVisitDensity.m
calcVisitDensity_aux.m		calcVisitDensity_aux.m
calcVisitTime.m		calcVisitTime.m

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vistrack readme
  James Jun, Maler Lab
  2018 July 11

# Install
Download git.exe from [https://git-scm.com]

# Required toolbox
Image processing toolbox
(optional) Parallel processing toolbox 

# Usage
To open visual tracking GUI, run "vistrack gui" ("GUI" also works)
To update, run "vistrack update"
To display help, run "vistrack help"

# Download sample video file
You need to download a separate large sample video file (R12A2.wmv) from the link below:
https://www.dropbox.com/s/wamrg6ha2nk2ik3/R12A2.wmv?dl=1
Note that this video will only open in Windows for now due to Matlab restrictions.