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To convert mrc file to zarr array, first install poetry project and python dependencies:

cd PATH_TO_POETRY_PROJECT_DIRECTORY/
poetry install

run script using cli:

poetry run python3 src/zarr_to_mrc.py  --src=PATH_TO_MRC_FILE --dest=OUTPUT_ZARR_FILE --cluster=local/lsf --workers=50 --scale 10.0 10.0 10.0 --units nanometer nanometer nanometer

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Convert large mrc files to zarr arrays

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