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jkitchin · Jun 19, 2024 · 283e8fb · 283e8fb
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diff --git a/blog/basic-python.html b/blog/basic-python.html
@@ -1094,7 +1094,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fb450903740&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fccdcf1f740&gt;
 4
 </pre></div>
 </div>
@@ -1110,7 +1110,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fb450903560&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fccdcf1f560&gt;
 5
 </pre></div>
 </div>
@@ -1127,7 +1127,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fb4509032e0&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fccdcf1f240&gt;
 5
 5
 </pre></div>
@@ -1148,7 +1148,7 @@ <h2>Lambda Lambda Lambda<a class="headerlink" href="#lambda-lambda-lambda" title
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fb450903420&gt;
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>&lt;function &lt;lambda&gt; at 0x7fccdcf1f2e0&gt;
 1
 3
 6
@@ -1324,7 +1324,7 @@ <h2>Creating arrays in python<a class="headerlink" href="#creating-arrays-in-pyt
  [4 5 6]]
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1860/3002503601.py:4: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1876/3002503601.py:4: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
   print(np.row_stack([a, b]))
 </pre></div>
 </div>
@@ -1777,7 +1777,7 @@ <h2>Indexing vectors and arrays in Python<a class="headerlink" href="#indexing-v
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>-1.7950016288086892
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1860/518394352.py:3: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1876/518394352.py:3: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   print(np.trapz( x[x &gt; 2], y[x &gt; 2]))
 </pre></div>
 </div>
@@ -1874,17 +1874,17 @@ <h3>3D arrays<a class="headerlink" href="#id2" title="Link to this heading">#</a
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[[0.60401457 0.42533872 0.93840015]
-  [0.12716527 0.99151888 0.15692771]
-  [0.91409873 0.26329103 0.5895779 ]]
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[[0.99626973 0.69562271 0.94324383]
+  [0.5703814  0.85584084 0.38293669]
+  [0.17543242 0.41417271 0.67454423]]
 
- [[0.03590242 0.16351498 0.17907574]
-  [0.80641519 0.31224006 0.16718964]
-  [0.43165799 0.96104831 0.24668237]]
+ [[0.95762987 0.13058905 0.70166628]
+  [0.85707109 0.7947389  0.87342645]
+  [0.47976315 0.16572893 0.92925022]]
 
- [[0.57819347 0.04331374 0.92559907]
-  [0.74721002 0.43024764 0.01597391]
-  [0.6437727  0.66966779 0.05675119]]]
+ [[0.90226016 0.19408337 0.22821798]
+  [0.18375515 0.86496231 0.97431629]
+  [0.56248399 0.53759531 0.68440063]]]
 </pre></div>
 </div>
 </div>
@@ -1898,11 +1898,11 @@ <h3>3D arrays<a class="headerlink" href="#id2" title="Link to this heading">#</a
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.60401457 0.12716527 0.91409873]
- [0.03590242 0.80641519 0.43165799]
- [0.57819347 0.74721002 0.6437727 ]]
-[0.60401457 0.03590242 0.57819347]
-[0.17907574 0.16718964 0.24668237]
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[[0.99626973 0.5703814  0.17543242]
+ [0.95762987 0.85707109 0.47976315]
+ [0.90226016 0.18375515 0.56248399]]
+[0.99626973 0.95762987 0.90226016]
+[0.70166628 0.87342645 0.92925022]
 </pre></div>
 </div>
 </div>

diff --git a/blog/differential-equations.html b/blog/differential-equations.html
@@ -1613,7 +1613,7 @@ <h3>Linear algebra approaches to solving systems of constant coefficient ODEs<a
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1913/2289625004.py:4: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1936/2289625004.py:4: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
   T = np.row_stack([t, t])
 </pre></div>
 </div>

diff --git a/blog/interpolation.html b/blog/interpolation.html
@@ -914,9 +914,9 @@ <h2>Interpolation with splines<a class="headerlink" href="#interpolation-with-sp
          Function evaluations: 24
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1945/1138919460.py:26: DeprecationWarning: Conversion of an array with ndim &gt; 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1967/1138919460.py:26: DeprecationWarning: Conversion of an array with ndim &gt; 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
   plt.title(&#39;Max point = ({0:1.2f}, {1:1.2f})&#39;.format(float(xmax),
-/tmp/ipykernel_1945/1138919460.py:27: DeprecationWarning: Conversion of an array with ndim &gt; 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
+/tmp/ipykernel_1967/1138919460.py:27: DeprecationWarning: Conversion of an array with ndim &gt; 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.)
   float(f(xmax))));
 </pre></div>
 </div>

diff --git a/blog/linear-algebra.html b/blog/linear-algebra.html
@@ -1176,7 +1176,7 @@ <h2>Determining linear independence of a set of vectors<a class="headerlink" hre
 2
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1972/3718588497.py:6: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1992/3718588497.py:6: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
   A = np.row_stack([v1, v2, v3])
 </pre></div>
 </div>
@@ -1229,7 +1229,7 @@ <h3>Another example<a class="headerlink" href="#id2" title="Link to this heading
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[7.57773162 5.99149259]
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1972/73961882.py:7: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1992/73961882.py:7: DeprecationWarning: `row_stack` alias is deprecated. Use `np.vstack` directly.
   A = np.row_stack([v1, v2])
 </pre></div>
 </div>

diff --git a/blog/math.html b/blog/math.html
@@ -671,9 +671,9 @@ <h2>Numeric derivatives by differences<a class="headerlink" href="#numeric-deriv
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> Forward difference took 0.000214 seconds
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> Forward difference took 0.000208 seconds
  Backward difference took 0.000190 seconds
- Centered difference took 0.000228 seconds
+ Centered difference took 0.000227 seconds
 </pre></div>
 </div>
 <img alt="../_images/82cc01e9a70af72babb19d11f2f1a5bc180f8073d593930b8a0310a827a72140.png" src="../_images/82cc01e9a70af72babb19d11f2f1a5bc180f8073d593930b8a0310a827a72140.png" />
@@ -773,7 +773,7 @@ <h2>2-point vs. 4-point numerical derivatives<a class="headerlink" href="#point-
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../_images/c194744c292e496ccc2a1c5bc885c0f83b07307393cde91c9c131f3020e97af9.png" src="../_images/c194744c292e496ccc2a1c5bc885c0f83b07307393cde91c9c131f3020e97af9.png" />
+<img alt="../_images/18dd6c488f66be8b710d743c4241a23efcda5e4d1feb3c1af835a70104939a11.png" src="../_images/18dd6c488f66be8b710d743c4241a23efcda5e4d1feb3c1af835a70104939a11.png" />
 </div>
 </div>
 </section>
@@ -898,7 +898,7 @@ <h2>Derivatives by FFT<a class="headerlink" href="#derivatives-by-fft" title="Li
 </div>
 </div>
 <div class="cell_output docutils container">
-<img alt="../_images/9201e4fa3406aca7a8aa1c8d143abb291e09248877f0801da47029144085b2bb.png" src="../_images/9201e4fa3406aca7a8aa1c8d143abb291e09248877f0801da47029144085b2bb.png" />
+<img alt="../_images/b23421abfbc994b29e5a14becf1918b5cf4af6ec1cb144663ff7416b1cf04597.png" src="../_images/b23421abfbc994b29e5a14becf1918b5cf4af6ec1cb144663ff7416b1cf04597.png" />
 </div>
 </div>
 </section>
@@ -1278,7 +1278,7 @@ <h3>Numerical data integration<a class="headerlink" href="#numerical-data-integr
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>4.25 0.0625
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1997/1388173814.py:6: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2018/1388173814.py:6: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   i2 = np.trapz(y, x)
 </pre></div>
 </div>
@@ -1321,7 +1321,7 @@ <h3>Numerical data integration<a class="headerlink" href="#numerical-data-integr
 <div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>4.000408121620243
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1997/1343167527.py:6: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2018/1343167527.py:6: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   print(np.trapz(y2, x2))
 </pre></div>
 </div>
@@ -1361,7 +1361,7 @@ <h3>Combining numerical data with quad<a class="headerlink" href="#combining-num
 2.5312499999999987
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1997/1681875887.py:13: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2018/1681875887.py:13: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   print(np.trapz(yfine, xfine))
 </pre></div>
 </div>
@@ -1772,7 +1772,7 @@ <h2>The trapezoidal method of integration<a class="headerlink" href="#the-trapez
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 0.0007169246673583984 sec
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 0.0006668567657470703 sec
 1.9999983517708524
 </pre></div>
 </div>
@@ -1793,7 +1793,7 @@ <h2>The trapezoidal method of integration<a class="headerlink" href="#the-trapez
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 0.00022602081298828125 sec
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 0.00022292137145996094 sec
 1.9999934070923728
 </pre></div>
 </div>
@@ -1812,7 +1812,7 @@ <h2>The trapezoidal method of integration<a class="headerlink" href="#the-trapez
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 7.295608520507812e-05 sec
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>time elapsed = 8.654594421386719e-05 sec
 1.999993407092373
 </pre></div>
 </div>
@@ -1851,9 +1851,9 @@ <h2>Numerical Simpsons rule<a class="headerlink" href="#numerical-simpsons-rule"
 analy = 0.7071067811865475
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1997/1607523249.py:10: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2018/1607523249.py:10: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   t = np.trapz(y, x)
-/tmp/ipykernel_1997/1607523249.py:11: DeprecationWarning: &#39;scipy.integrate.simps&#39; is deprecated in favour of &#39;scipy.integrate.simpson&#39; and will be removed in SciPy 1.14.0
+/tmp/ipykernel_2018/1607523249.py:11: DeprecationWarning: &#39;scipy.integrate.simps&#39; is deprecated in favour of &#39;scipy.integrate.simpson&#39; and will be removed in SciPy 1.14.0
   s = simps(y, x)
 </pre></div>
 </div>
@@ -2007,7 +2007,7 @@ <h2>Function integration by the Romberg method<a class="headerlink" href="#funct
 0.2928932188134519
 </pre></div>
 </div>
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_1997/1760157840.py:9: DeprecationWarning: `scipy.integrate.romberg` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2018/1760157840.py:9: DeprecationWarning: `scipy.integrate.romberg` is deprecated as of SciPy 1.12.0and will be removed in SciPy 1.15.0. Please use`scipy.integrate.quad` instead.
   print(romberg(np.sin, a, b))
 </pre></div>
 </div>

diff --git a/blog/nonlinear-algebra.html b/blog/nonlinear-algebra.html
@@ -763,10 +763,10 @@ <h2>Method of continuity for nonlinear equation solving<a class="headerlink" hre
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2026/4022852329.py:19: RuntimeWarning: The iteration is not making good progress, as measured by the 
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2048/4022852329.py:19: RuntimeWarning: The iteration is not making good progress, as measured by the 
   improvement from the last ten iterations.
   y1, = fsolve(tmp, x0)
-/tmp/ipykernel_2026/4022852329.py:19: RuntimeWarning: The iteration is not making good progress, as measured by the 
+/tmp/ipykernel_2048/4022852329.py:19: RuntimeWarning: The iteration is not making good progress, as measured by the 
   improvement from the last five Jacobian evaluations.
   y1, = fsolve(tmp, x0)
 </pre></div>

diff --git a/blog/plotting.html b/blog/plotting.html
@@ -1171,7 +1171,7 @@ <h2>Peak annotation in matplotlib<a class="headerlink" href="#peak-annotation-in
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2087/256016704.py:19: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
+<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/tmp/ipykernel_2105/256016704.py:19: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
   area = np.trapz(i[ind], w[ind])
 </pre></div>
 </div>

diff --git a/blog/programming.html b/blog/programming.html
@@ -793,7 +793,7 @@ <h2>Unique entries in a vector<a class="headerlink" href="#unique-entries-in-a-v
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&#39;b&#39;, &#39;a&#39;, &#39;c&#39;, &#39;d&#39;, &#39;abracadabra&#39;]
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>[&#39;a&#39;, &#39;d&#39;, &#39;abracadabra&#39;, &#39;b&#39;, &#39;c&#39;]
 </pre></div>
 </div>
 </div>
@@ -1166,11 +1166,11 @@ <h2>About your python<a class="headerlink" href="#about-your-python" title="Link
 </div>
 </div>
 <div class="cell_output docutils container">
-<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>uname_result(system=&#39;Linux&#39;, node=&#39;fv-az1208-32&#39;, release=&#39;6.5.0-1022-azure&#39;, version=&#39;#23~22.04.1-Ubuntu SMP Thu May  9 17:59:24 UTC 2024&#39;, machine=&#39;x86_64&#39;)
+<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>uname_result(system=&#39;Linux&#39;, node=&#39;fv-az975-113&#39;, release=&#39;6.5.0-1022-azure&#39;, version=&#39;#23~22.04.1-Ubuntu SMP Thu May  9 17:59:24 UTC 2024&#39;, machine=&#39;x86_64&#39;)
 Linux
 (&#39;64bit&#39;, &#39;ELF&#39;)
 x86_64
-fv-az1208-32
+fv-az975-113
 Linux-6.5.0-1022-azure-x86_64-with-glibc2.35
 x86_64
 (&#39;main&#39;, &#39;May  9 2024 14:13:20&#39;)