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jtnystrom committed Feb 9, 2024
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While highly scalable, the pregrouped method may sometimes cause a slowdown overall (by requiring one additional shuffle),
so it should not be used for datasets that do not need it. See the section on [performance tuning](#performance-tuning-for-large-datasets).

Additional examples may be found in the [wiki](https://github.com/jtnystrom/Discount/wiki).

### K-mer indexes

Discount can store a multiset of counted k-mers as an index (k-mer database). Indexes can be combined by various
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discount.sh intersect --help
`

More examples can be found in the [wiki](https://github.com/jtnystrom/Discount/wiki).

#### Partitions

For each index, a number of parquet files will be created in the corresponding directory. The number of partitions
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