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1. PO_2_MLSA PO_2_MLSA Public

   Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho

   Python 4

2. fasta2phylip fasta2phylip Public

   simple conversion of fasta alignments to phylip

   Python 4

3. PO_2_GENECONTENT PO_2_GENECONTENT Public

   Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho

   Python 2

4. bin_polisher bin_polisher Public

   Purify pre-generated bins (e.g. using Maxbin) based on z-score differences in contig coverage using multiple sequencing datasets

   Python 1

5. bac-genomics-scripts bac-genomics-scripts Public

   Forked from aleimba/bac-genomics-scripts

   Collection of scripts for bacterial genomics

   Perl

6. prokka prokka Public

   Forked from tseemann/prokka

   Rapid prokaryotic genome annotation

   Perl