Uses psutil to measure RAM, add a pipeline to check the truth kmer intersection with a query and other misc changes #222
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This PR uses
psutilto measure total RAM usage of the pipeline. This is related to #219 . It is just another way to provide RAM measurement. Ifpsutilis not installed, we printN/A (psutil not installed)in its field, sopsutilis not an essential dependency.It also adds a truth pipeline (dir
truth_pipeline) that computes the true intersection of the full 661k dataset against a set of queries. This is what I used to debug #188 and it will be very handy in the future.It also do some other misc things:
make testcommand;If this PR is approved and merged, I think only #182 will be remaining then for preprint