Disease.Process

Introduction

Disease Data Integration Code

Data Sources

• CTDBase
• Disease Ontoloy
• DisGeNet
• Human Phenotype Ontology
• MeSH
• NDF-RT
• Orphanet
• PharmacotherapyDB
• KEGG

Requirements

• Python (>=3.4) Pycharm

    decorator==4.0.10
    isodate==0.5.4
    networkx==1.11
    numpy==1.11.1
    pandas==0.18.1
    pkg-resources==0.0.0
    pymongo==3.3.0
    pyparsing==2.1.8
    python-dateutil==2.5.3
    pytz==2016.6.1
    rdflib==4.2.1
    rdflib-jsonld==0.4.0
    requests==2.11.1
    six==1.10.0
    tqdm==4.8.4
    wget==3.2

• MongoDB (>=3.0) Robomongo