WIP: adds a snakefile to get/extract resources from zenodo

still have to think about best way to package/unpackage these.. the
workflow does it, but ideally should be streamlined either into the main
workflow, or the pip install

hippunfold/resources/Snakefile

@@ -0,0 +1,68 @@
+#simple workflow for pushing resources to zenodo
+
+
+from snakemake.remote.zenodo import RemoteProvider
+import os
+
+# let Snakemake assert the presence of the required environment variable
+envvars:
+    "MYZENODO_PAT"
+
+
+
+access_token = os.environ["MYZENODO_PAT"]
+zenodo = RemoteProvider(deposition='8381163',access_token=access_token)
+#zenodo = RemoteProvider(access_token=access_token)
+
+folders_to_download = ['CITI168',
+                        'tpl-dHCP',
+#                        'tpl-upenn',
+                        'unfold_template_hipp',
+                        'unfold_template_dentate']
+
+wildcard_constraints:
+    folder='[a-zA-Z0-9_-]+'
+
+rule all_download:
+    input:
+        expand('{folder}',folder=folders_to_download)
+
+rule all_upload:
+    input:
+        expand('{folder}.tar',folder=folders_to_download)
+
+
+rule download:
+    input:
+        zenodo.remote("{folder}.tar")
+    output:
+        temp('from_zenodo/{folder}.tar')
+    shell:
+        'cp {input} {output}'
+
+rule create_tar:
+    input:
+        '{folder}'
+    output:
+        temp('to_zenodo/{folder}.tar')
+    shell:
+        'tar -cvf {output} {input}'
+
+
+rule upload:
+    input:
+        'to_zenodo/{folder}.tar'
+    output:
+        zenodo.remote("{folder}.tar")
+    shell:
+        "cp {input} {output}"
+
+rule extract_tar:
+    input:
+        'from_zenodo/{folder}.tar'
+    output:
+        directory('{folder}')
+    shell:
+        'tar -xvf {input}'
+
+