CRG_Master_Internship

The following scripts are used for the analysis of data for the MCL project. All the scripts were created and monitored by

All of whom are part of the CRG

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
Alluvial_v2.R		Alluvial_v2.R
Bind_Matrices.R		Bind_Matrices.R
Boxplot_Corr.R		Boxplot_Corr.R
Chromosome Length - Circos.R		Chromosome Length - Circos.R
Chromosome Length vs Increased Bins.R		Chromosome Length vs Increased Bins.R
Chromosome Length vs OR (Barplot).R		Chromosome Length vs OR (Barplot).R
Chromosome Length vs OR (Scatterplot).R		Chromosome Length vs OR (Scatterplot).R
Chromosome Length vs Raw counts ratio (Boxplot).R		Chromosome Length vs Raw counts ratio (Boxplot).R
Compartment Scores.R		Compartment Scores.R
Create_Corr_Matrix.R		Create_Corr_Matrix.R
Create_Matrices.R		Create_Matrices.R
Normalized Counts - Fold Change and T-test (FC selection).R		Normalized Counts - Fold Change and T-test (FC selection).R
Normalized Counts_All - Fold Change and T-test (FC selection).R		Normalized Counts_All - Fold Change and T-test (FC selection).R
Permutation Test - Corr.R		Permutation Test - Corr.R
Permutation Test - Telomeric Bins01.R		Permutation Test - Telomeric Bins01.R
README.md		README.md
Raw Counts - Odd Ratios and Fisher Test.R		Raw Counts - Odd Ratios and Fisher Test.R
Raw Counts - Relative Risk and Fisher Test.R		Raw Counts - Relative Risk and Fisher Test.R
Telomere Distance Calculation.R		Telomere Distance Calculation.R
Z-score.R		Z-score.R
circos.R		circos.R
heatmap.R		heatmap.R
t-SNE.R		t-SNE.R

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