changed dependecies

kipoi · Jul 29, 2019 · 36aef28 · 36aef28
1 parent 9a0cc94
commit 36aef28
Show file tree

Hide file tree

Showing 7 changed files with 7 additions and 6 deletions.
diff --git a/MMSplice/modules/acceptor/dataloader.yaml b/MMSplice/modules/acceptor/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice==0.27
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       ss:

diff --git a/MMSplice/modules/donor/dataloader.yaml b/MMSplice/modules/donor/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       ss:

diff --git a/MMSplice/modules/exon_3prime/dataloader.yaml b/MMSplice/modules/exon_3prime/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       input_4:

diff --git a/MMSplice/modules/exon_5prime/dataloader.yaml b/MMSplice/modules/exon_5prime/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       input_3:

diff --git a/MMSplice/modules/intron_3prime/dataloader.yaml b/MMSplice/modules/intron_3prime/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       input_5:

diff --git a/MMSplice/modules/intron_5prime/dataloader.yaml b/MMSplice/modules/intron_5prime/dataloader.yaml
@@ -70,7 +70,7 @@ dependencies:
     - python=3.5
   pip:
     - kipoi
-    - mmsplice
+    - mmsplice==0.2.7
 output_schema:
     inputs:
       input_15:

diff --git a/labranchor/model.yaml b/labranchor/model.yaml
@@ -9,6 +9,7 @@ default_dataloader: .
 dependencies:
   conda:
   - pip
+  - bioconda::pysam
   pip:
   - tensorflow>=1.0.0
   - keras>=2.0.4