Example config.yaml for current plant-seg version missing

[Dampfnudeldroid]

Hi everyone,

I would like to use plantseg in headless mode (calling plantseg --config /path/to/config.yaml).

The examplary configuration found in plant-seg/examples/config.yaml doesn't contain the keys that the function parse_input_config in headless.py is looking for. Also none of the files in plant-seg/plantseg/resources fit.
Could you provide an examplary configuration file and also link it in the documentation?

Thanks for your help.

[lorenzocerrone]

Hi!

You are right. What you see in the headless.py file does not match the examples. Sorry for the confusion.

We recently had an alpha release of plantseg version 2.0. There have been a lot of changes, and the headless one is one of them.
The configs in the example folder still refer to the old plantseg<=1.8.1
We are still working on fixing issues in plantseg version 2.0, and the example will be updated in the next couple of weeks.

Meanwhile, please install plantseg==1.8.1 to use the headless mode.

I hope this helps, and please let me know if you have issues with the installation.