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Issues: kreshuklab/plant-seg

Need tests for core functionalities
#253 opened May 29, 2024 by qin-yu
Open
Complexity in prediction widget
#308 opened Sep 4, 2024 by qin-yu
Open 3
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42 Open 154 Closed
42 Open 154 Closed
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Issues list

Non-OOM error can happen during patch size finder bug Something isn't working
#360 opened Nov 21, 2024 by qin-yu
@qin-yu
Classic GUI is unavailable for PlantSeg 2.0. documentation Improvements or additions to documentation Legacy Legacy GUI related
#350 opened Oct 8, 2024 by athulrv
4
Possible issues in 1.8.1 Legacy Legacy GUI related
#342 opened Oct 1, 2024 by PauCasanova
1
Example config.yaml for current plant-seg version missing
#340 opened Oct 1, 2024 by Dampfnudeldroid
1
Need to use Enum in a better way enhancement New feature or request
#325 opened Sep 19, 2024 by qin-yu
Areas of GUI improvement before v2.0.0-alpha enhancement New feature or request GUI Napari GUI related
#324 opened Sep 19, 2024 by qin-yu
18 of 21 tasks
@qin-yu @lorenzocerrone
4
Use of Enum should be consistent enhancement New feature or request
#319 opened Sep 14, 2024 by qin-yu
Complexity in prediction widget BioImage.IO Related to BioImage.IO and AI4Life enhancement New feature or request GUI Napari GUI related
#308 opened Sep 4, 2024 by qin-yu
@qin-yu
3
2D Segmentation CNN Postprocessing Dimensions Error question Further information is requested
#301 opened Aug 30, 2024 by FliFlaFlock
2
No semantic type for probability maps
#295 opened Aug 20, 2024 by qin-yu
Failed to load or parse config_train.yml: 'loaders'
#293 opened Aug 15, 2024 by Yifan-debug
Should functionals take PlantSeg classes e.g. VoxelSize or tuple[float, float, float] bug Something isn't working enhancement New feature or request
#290 opened Aug 1, 2024 by qin-yu
1
Non-OOM error raised by PyTorch during find_batch_size() bug Something isn't working Legacy Legacy GUI related
#286 opened Jul 30, 2024 by OriKovacsiKatz
4
Refactor Actions because docs build contains conda build enhancement New feature or request
#283 opened Jun 25, 2024 by qin-yu
Need more labels error from vigra during watershed in classic GUI bug Something isn't working Legacy Legacy GUI related
#281 opened Jun 13, 2024 by athulrv
1
Proofreading tool doesn't allow adding scribbles documentation Improvements or additions to documentation GUI Napari GUI related question Further information is requested
#280 opened Jun 12, 2024 by Buglakova
1
Error while trying to open GUI in the latest PlantSeg version bug Something isn't working question Further information is requested
#274 opened Jun 7, 2024 by adkrishnan
1
@qin-yu
9
Watershed uses only one CPU and runs very slow on large volumes enhancement New feature or request
#270 opened Jun 4, 2024 by qin-yu
2
Model resolution should allow None to avoid a default like (1.0, 1.0, 1.0) bug Something isn't working
#254 opened May 29, 2024 by qin-yu
@qin-yu
2
Need tests for core functionalities enhancement New feature or request GUI Napari GUI related
#253 opened May 29, 2024 by qin-yu
1 task done
Need to make use of predictions from multiple models enhancement New feature or request GUI Napari GUI related
#225 opened Apr 25, 2024 by qin-yu
2 tasks
@qin-yu
Re-train all PlantSeg models to eliminate hallucination during inference BioImage.IO Related to BioImage.IO and AI4Life bug Something isn't working enhancement New feature or request
#224 opened Apr 17, 2024 by qin-yu
@qin-yu
Out of (host) memory at Data Pre-Processing step enhancement New feature or request question Further information is requested
#214 opened Mar 13, 2024 by bobonannan
3
Allow direct search and download from BioImage Model Zoo BioImage.IO Related to BioImage.IO and AI4Life enhancement New feature or request
#210 opened Mar 7, 2024 by qin-yu
@qin-yu
7
Napari GUI: Parameter/config checking happens at widget runtime enhancement New feature or request GUI Napari GUI related
#209 opened Mar 6, 2024 by qin-yu
@qin-yu
2
ProTip! Updated in the last three days: updated:>2024-11-22.