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Adds github error support to docs
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neukym committed Oct 14, 2024
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Expand Up @@ -119,6 +119,19 @@ See `demos/demo_ippm.ipynb`.

## Troubleshooting on the CBU compute cluster

You see `Acccess denied permission error: 403` when you try to use github.

- Create (or modify) the `config` file in `~/.ssh/`:

```
Host github.com
LogLevel DEBUG3
User git
Hostname github.com
PreferredAuthentications publickey
IdentityFile /home/<username>/.ssh/<name of private key>
```

You see `pyenv: Command not found`, `poetry: Command not found`

- On the CBU nodes, `pyenv` only works in `bash`, so make sure you are using this.
Expand Down Expand Up @@ -148,7 +161,7 @@ You see `ModuleNotFoundError: No module named 'kymata'`
# Allow the CBU poetry to communicate with pip
export PYTHON_KEYRING_BACKEND=keyring.backends.null.Keyring

$VENV_PATH/bin/poetry install
$VENV_PATH/bin/poetry install
```

- Now (within the Apptainer) you can run it using `poetry`, e.g.:
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