Files in this repository:

• random_forest_feat_selection.R: codes for training the model
• random_forest_feat_selection_test.R: codes for running the trained model on test data
• 3rdChallengeSubmission_LiMaoNguyenTan.tsv: results generated on test data

Dependencies (from SessionInfo()):

R version 4.4.0 (2024-04-24) Platform: aarch64-apple-darwin20 Running under: macOS Sonoma 14.6.1

Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/New_York tzcode source: internal

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] xgboost_1.7.8.1 impute_1.78.0 randomForest_4.7-1.2 forcats_1.0.0 stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2
[8] readr_2.1.5 tidyr_1.3.1 tibble_3.2.1 ggplot2_3.5.1 tidyverse_2.0.0 glmnet_4.1-8 Matrix_1.7-1
[15] lubridate_1.9.3 RSpectra_0.16-2 mogsa_1.38.0 omicade4_1.44.0 ade4_1.7-22

loaded via a namespace (and not attached): [1] DBI_1.2.3 bitops_1.0-9 GSEABase_1.66.0 rlang_1.1.4 magrittr_2.0.3
[6] matrixStats_1.4.1 compiler_4.4.0 RSQLite_2.3.7 png_0.1-8 vctrs_0.6.5
[11] pkgconfig_2.0.3 shape_1.4.6.1 crayon_1.5.3 fastmap_1.2.0 XVector_0.44.0
[16] svd_0.5.7 caTools_1.18.3 utf8_1.2.4 tzdb_0.4.0 graph_1.82.0
[21] UCSC.utils_1.0.0 bit_4.5.0 made4_1.78.0 zlibbioc_1.50.0 cachem_1.1.0
[26] graphite_1.50.0 GenomeInfoDb_1.40.1 jsonlite_1.8.9 blob_1.2.4 DelayedArray_0.30.1
[31] parallel_4.4.0 cluster_2.1.6 R6_2.5.1 stringi_1.8.4 RColorBrewer_1.1-3
[36] genefilter_1.86.0 GenomicRanges_1.56.2 Rcpp_1.0.13-1 SummarizedExperiment_1.34.0 iterators_1.0.14
[41] IRanges_2.38.1 splines_4.4.0 timechange_0.3.0 tidyselect_1.2.1 rstudioapi_0.17.1
[46] abind_1.4-8 gplots_3.2.0 codetools_0.2-20 lattice_0.22-6 Biobase_2.64.0
[51] withr_3.0.2 KEGGREST_1.44.1 survival_3.7-0 Biostrings_2.72.1 pillar_1.9.0
[56] MatrixGenerics_1.16.0 KernSmooth_2.23-24 foreach_1.5.2 stats4_4.4.0 generics_0.1.3
[61] S4Vectors_0.42.1 hms_1.1.3 munsell_0.5.1 scales_1.3.0 gtools_3.9.5
[66] xtable_1.8-4 glue_1.8.0 scatterplot3d_0.3-44 tools_4.4.0 data.table_1.16.2
[71] annotate_1.82.0 XML_3.99-0.17 grid_4.4.0 AnnotationDbi_1.66.0 colorspace_2.1-1
[76] GenomeInfoDbData_1.2.12 cli_3.6.3 rappdirs_0.3.3 fansi_1.0.6 S4Arrays_1.4.1
[81] corpcor_1.6.10 gtable_0.3.6 BiocGenerics_0.50.0 SparseArray_1.4.8 memoise_2.0.1
[86] lifecycle_1.0.4 httr_1.4.7 bit64_4.5.2 MASS_7.3-61