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Add plotly in the dependencies of the two shiny apps
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@aursiber
aursiber committed Dec 5, 2023
1 parent c471696 commit c701549
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Showing 4 changed files with 8 additions and 4 deletions.
9 changes: 5 additions & 4 deletions inst/DRomics-shiny/install.R
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Expand Up @@ -2,17 +2,18 @@ update.packages(repos = "http://cran.univ-lyon1.fr", ask = FALSE, checkBuild = T
BiocManager::install(ask = FALSE, update = TRUE)
if(!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("DESeq2", quietly = TRUE)) {
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
BiocManager::install("DESeq2", ask = FALSE)
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
BiocManager::install("DESeq2", ask = FALSE)
}
if(!requireNamespace("limma", quietly = TRUE)) {
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
BiocManager::install("limma", ask = FALSE)
if(!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
BiocManager::install("limma", ask = FALSE)
}
if(!requireNamespace("ggplot2", quietly = TRUE)) install.packages("ggplot2", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
remotes::install_github("rstudio/shiny")
if(!requireNamespace("shinyjs", quietly = TRUE)) install.packages("shinyjs", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("shinyBS", quietly = TRUE)) install.packages("shinyBS", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("shinycssloaders", quietly = TRUE)) install.packages("shinycssloaders", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("tools", quietly = TRUE)) install.packages("tools", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("plotly", quietly = TRUE)) install.packages("plotly", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
remotes::install_github("aursiber/DRomics") # always install 'DRomics' to always have the last version from github
1 change: 1 addition & 0 deletions inst/DRomics-shiny/rinstall.txt
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Expand Up @@ -15,4 +15,5 @@ if(!requireNamespace("shinyjs", quietly = TRUE)) install.packages("shinyjs", dep
if(!requireNamespace("shinyBS", quietly = TRUE)) install.packages("shinyBS", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("shinycssloaders", quietly = TRUE)) install.packages("shinycssloaders", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("tools", quietly = TRUE)) install.packages("tools", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("plotly", quietly = TRUE)) install.packages("plotly", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
remotes::install_github("aursiber/DRomics") # always install 'DRomics' to always have the last version from github
1 change: 1 addition & 0 deletions inst/DRomicsInterpreter-shiny/install.R
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Expand Up @@ -15,4 +15,5 @@ if(!requireNamespace("shinyjs", quietly = TRUE)) install.packages("shinyjs", dep
if(!requireNamespace("shinyBS", quietly = TRUE)) install.packages("shinyBS", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("shinyWidgets", quietly = TRUE)) install.packages("shinyWidgets", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("sortable", quietly = TRUE)) install.packages("sortable", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("plotly", quietly = TRUE)) install.packages("plotly", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
remotes::install_github("aursiber/DRomics") # always install 'DRomics' to always have the last version from github
1 change: 1 addition & 0 deletions inst/DRomicsInterpreter-shiny/rinstall.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -15,4 +15,5 @@ if(!requireNamespace("shinyjs", quietly = TRUE)) install.packages("shinyjs", dep
if(!requireNamespace("shinyBS", quietly = TRUE)) install.packages("shinyBS", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("shinyWidgets", quietly = TRUE)) install.packages("shinyWidgets", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("sortable", quietly = TRUE)) install.packages("sortable", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
if(!requireNamespace("plotly", quietly = TRUE)) install.packages("plotly", dependencies = TRUE, repos = "http://cran.univ-lyon1.fr")
remotes::install_github("aursiber/DRomics") # always install 'DRomics' to always have the last version from github

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