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[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/MareyMap)](https://cran.r-project.org/package=MareyMap) | ||
[![R-CMD-check](https://github.com/lbbe-software/MareyMap/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/lbbe-software/MareyMap/workflows/R-CMD-check.yaml) | ||
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**Please note! Since January 2024, this repository has belonged to the lbbe-software organization.** | ||
To avoid confusion, we strongly recommend updating any existing local clones to point to the new repository URL. You can do this by using git remote on the command line: | ||
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`git remote set-url origin [email protected]:lbbe-software/MareyMap.git` | ||
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or | ||
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`git remote set-url origin https://github.com/lbbe-software/MareyMap.git` | ||
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--------------------------- | ||
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`MareyMap` is an R package to estimate local recombination rates along the genome using Marey maps. | ||
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`MareyMap` relies on comparing the genetic and the physical maps of a given chromosome to estimate local recombination rates (given by the slope of the curve describing the relationship between both variables), a graphical method called the Marey map method introduced by A. Chakravarti in 1991. `MareyMap` accepts Marey map data as input (genetic and physical positions of markers for a set of chromosomes of a species) and will return local recombination rate estimates. | ||
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