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aursiber committed Jan 22, 2024
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[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/MareyMap)](https://cran.r-project.org/package=MareyMap)
[![R-CMD-check](https://github.com/lbbe-software/MareyMap/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/lbbe-software/MareyMap/workflows/R-CMD-check.yaml)

**Please note! Since January 2024, this repository has belonged to the lbbe-software organization.**
To avoid confusion, we strongly recommend updating any existing local clones to point to the new repository URL. You can do this by using git remote on the command line:

`git remote set-url origin [email protected]:lbbe-software/MareyMap.git`

or

`git remote set-url origin https://github.com/lbbe-software/MareyMap.git`

---------------------------

`MareyMap` is an R package to estimate local recombination rates along the genome using Marey maps.

`MareyMap` relies on comparing the genetic and the physical maps of a given chromosome to estimate local recombination rates (given by the slope of the curve describing the relationship between both variables), a graphical method called the Marey map method introduced by A. Chakravarti in 1991. `MareyMap` accepts Marey map data as input (genetic and physical positions of markers for a set of chromosomes of a species) and will return local recombination rate estimates.
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