Updated code to use the latest versions of the C++ libraries. (#2) #5
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| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: Build the tool | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Cache installed | |
| id: installed | |
| uses: actions/cache@v4 | |
| with: | |
| path: extern/installed | |
| key: deps-${{ hashFiles('extern/**/build.sh') }} | |
| - name: Build igraph | |
| if: steps.installed.outputs.cache-hit != 'true' | |
| run: | | |
| cd extern/igraph | |
| bash build.sh | |
| - name: Prepare the build | |
| run: | | |
| cmake \ | |
| -S . \ | |
| -B build \ | |
| -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_INSTALL_PREFIX=extern/installed | |
| - name: Check all transitive dependencies are pinned | |
| run: | | |
| cat extern/CMakeLists.txt | \ | |
| grep "FetchContent_MakeAvailable" | \ | |
| sed "s/FetchContent_MakeAvailable(//" | \ | |
| sed "s/)//" | \ | |
| tr '[:upper:]' '[:lower:]' | \ | |
| sort > requested.txt | |
| ls build/_deps/ | \ | |
| grep "src$" | \ | |
| sed "s/-src//" | \ | |
| sort > observed.txt | |
| diffs=$(diff observed.txt requested.txt ) | |
| if [[ $diffs != '' ]] | |
| then | |
| exit 1 | |
| fi | |
| - name: Compile the tool | |
| run: cmake --build build | |
| - name: Download Zeisel | |
| uses: wei/wget@v1 | |
| with: | |
| args: -O matrix.mtx.gz https://github.com/kanaverse/random-test-files/releases/download/zeisel-brain-v1.0.0/matrix.mtx.gz | |
| - name: Run the tool | |
| run: ./build/scran --mito-list 19972-20005 matrix.mtx.gz |