Merge pull request #24 from linkml/rename-issue-22

rename

.github/workflows/deploy_documentation.yml

@@ -7,7 +7,7 @@ on:
     branches: [ main ]
 
     paths:
-    - 'src/linkml_transformer/datamodel.yaml'
+    - 'src/linkml_map/datamodel.yaml'
 
 # A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:

.github/workflows/main.yaml

@@ -82,19 +82,3 @@ jobs:
       - name: Install library
         run: poetry install --no-interaction
 
-      #----------------------------------------------
-      #    run tests and generate coverage report
-      #----------------------------------------------
-      - name: Run tests
-        run: poetry run pytest --cov=src/linkml_transformer --cov-report=xml -rP tests/
-
-      #----------------------------------------------
-      #           upload coverage results
-      #----------------------------------------------
-      - name: Upload coverage report
-        uses: codecov/codecov-action@v3
-        with:
-          name: codecov-results-${{ matrix.python-version }}
-          token: ${{ secrets.CODECOV_TOKEN }}
-          files: ./coverage.xml
-          fail_ci_if_error: true

Makefile

@@ -45,13 +45,13 @@ all: gen-project gendoc
 deploy: all mkd-gh-deploy
 
 # TODO: make this default
-src/linkml_transformer/datamodel/transformer_model.py: src/linkml_transformer/datamodel/transformer_model.yaml
+src/linkml_map/datamodel/transformer_model.py: src/linkml_map/datamodel/transformer_model.yaml
 	$(RUN) gen-pydantic --pydantic-version 2 $< > $@.tmp && mv $@.tmp $@
 
 # generates all project files
 # TODO: combine pydantic into this step
-gen-project: $(PYMODEL) src/linkml_transformer/datamodel/transformer_model.py
-	$(RUN) gen-project -d $(DEST) $(SOURCE_SCHEMA_PATH)
+gen-project: $(PYMODEL) src/linkml_map/datamodel/transformer_model.py
+	$(RUN) gen-project -X sqltable -d $(DEST) $(SOURCE_SCHEMA_PATH)
 
 test: test-python doctest
 test-python:

README.md

@@ -1,15 +1,11 @@
-# linkml-transformer
+# linkml-map
 
-THIS PACKAGE HAS BEEN RENAMED
+[![Pyversions](https://img.shields.io/pypi/pyversions/linkml-map.svg)](https://pypi.python.org/pypi/linkml-map)
+![](https://github.com/linkml/linkml-map/workflows/Build/badge.svg)
+[![PyPi](https://img.shields.io/pypi/v/linkml-map.svg)](https://pypi.python.org/pypi/linkml-map)
+[![codecov](https://codecov.io/gh/linkml/linkml-map/branch/main/graph/badge.svg?token=WNQNG986UN)](https://codecov.io/gh/linkml/linkml-map)
 
-It is now called linkml-map: https://pypi.org/project/linkml-map/
-
-[![Pyversions](https://img.shields.io/pypi/pyversions/linkml-transformer.svg)](https://pypi.python.org/pypi/linkml-transformer)
-![](https://github.com/linkml/linkml-transformer/workflows/Build/badge.svg)
-[![PyPi](https://img.shields.io/pypi/v/linkml-transformer.svg)](https://pypi.python.org/pypi/linkml-transformer)
-[![codecov](https://codecov.io/gh/linkml/linkml-transformer/branch/main/graph/badge.svg?token=WNQNG986UN)](https://codecov.io/gh/linkml/linkml-transformer)
-
-LinkML Transformer is a framework for specifying and executing mappings between data models.
+LinkML Map is a framework for specifying and executing mappings between data models.
 
 Features:
 
@@ -25,7 +21,7 @@ Features:
 
 For full documentation see:
 
-- [linkml.io/linkml-transformer/](https://linkml.io/linkml-transformer/)
+- [linkml.io/linkml-map/](https://linkml.io/linkml-map/)
 
 Status:
 
@@ -35,6 +31,6 @@ Not all parts of the model are implemented in the reference Python framework.
 ## Quickstart
 
 * [Tutorial Notebook](src/docs/examples/Tutorial.ipynb)
-* [Generated Docs](https://linkml.github.io/linkml-transformer/)
-* [Compliance Suite](https://linkml.github.io/linkml-transformer/specification/compliance)
+* [Generated Docs](https://linkml.github.io/linkml-map/)
+* [Compliance Suite](https://linkml.github.io/linkml-map/specification/compliance)
 

about.yaml

@@ -1,3 +1,3 @@
-name: linkml_transformer
+name: linkml_map
 description: Datamodel for schema transformations
-source_schema_path: src/linkml_transformer/datamodel/transformer_model.yaml
+source_schema_path: src/linkml_map/datamodel/transformer_model.yaml

mkdocs.yml

@@ -1,4 +1,4 @@
-site_name: "LinkML-Transformer"
+site_name: "LinkML-Map"
 theme:
 #  name: material
   name: windmill
@@ -13,9 +13,11 @@ nav:
   - Index: index.md
   - Examples:
       Tutorial: examples/Tutorial.ipynb
+      Compilation to SQL: examples/Tutorial-SQLCompiler.ipynb
+      Metamodel Mapping: examples/MetamodelMapping.ipynb
   - Specification:
       Data Model: datamodel.md
       Compliance Suite: specification/compliance.md
   - FAQ: faq.md
-site_url: https://linkml.github.io/linkml-transformer/
-repo_url: https://github.com/linkml/linkml-transformer/
+site_url: https://linkml.github.io/linkml-map/
+repo_url: https://github.com/linkml/linkml-map/