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@github-actions github-actions released this 03 Jan 00:25
· 0 commits to main since this release
v0.1.5
1ea673a

Commits

  • 77ab79e: 📝 Add install script for easy setup (Lucas Taniguti)
  • ded0152: 📝 remove comment block (Lucas Taniguti)
  • d27c946: 📝 Update install.sh and README.md (Lucas Taniguti)
  • 6552f13: 📝 Update default release version in install script (Lucas Taniguti)
  • 9f6d586: 🚧 Update file paths in release workflow (Lucas Taniguti)
  • e289d50: ♻️ directory structory to make it easy test for changes (Lucas Taniguti)
  • 9722267: ✅ Add test execution for changed WDL files (Lucas Taniguti)
  • 7dba315: 💚 Add ref parameter to actions/checkout step (Lucas Taniguti)
  • 816991d: 💚 Update actions/checkout to v4 and set fetch-depth to 0 (Lucas Taniguti)
  • a08f8d6: ♻️ Fix formatting in fetch.wdl (Lucas Taniguti)
  • 3d0dad5: 💚 Update Docker and Python setup actions (Lucas Taniguti)
  • 7722c16: ✅ Update Python dependencies for tests (Lucas Taniguti)
  • adcccbb: ♻️ Add dynamic matrix generation for changed files in test job (Lucas Taniguti)
  • 63856f6: 💚 Try to fix json object (Lucas Taniguti)
  • 04e8622: 💚 Update release.yml (Lucas Taniguti)
  • 4b78b67: ⬇️ Update release.yml (Lucas Taniguti)
  • 27b5b10: ♻️ Update WDL files input order (Lucas Taniguti)
  • 9b7e85f: 🐛 Matrix when multiple files changed (Lucas Taniguti)
  • 57eb547: ✅ Add support for stub mode in Clair3Haploid task (Lucas Taniguti)
  • b26b6ea: 📝 Add test and release badge to README.md (Lucas Taniguti)
  • dece422: 🐛 Add conditional check for running tests if there are changes (Lucas Taniguti)
  • a50b231: ✨ Add version.txt file and update Clair3Haploid task (Lucas Taniguti)
  • 8aae57d: 💚 Update release.yml and haploid.wdl (Lucas Taniguti)
  • 3bb94c7: 💚 Update release.yml and haploid.wdl (Lucas Taniguti)
  • 7a0df80: 💚 Add artifact (Lucas Taniguti)
  • a9aac45: 💚 Update pytest command and disk size calculation (Lucas Taniguti)
  • 3099a77: 💚 Update release.yml and haploid.wdl (Lucas Taniguti)
  • 10ebf3f: 💚 Keep temporary directory (Lucas Taniguti)
  • f500b64: ✨ Add HAPPY task and test files (Lucas Taniguti)
  • 4094d30: 💚 Artifact better name (Lucas Taniguti)
  • 5274295: 💚 Fix artifact name generation in release workflow (Lucas Taniguti)
  • ffd9738: ✨ Add DeepVariantCustomModel task and test files (Lucas Taniguti)
  • a8e43ff: ✨ Add DeepVariant standard task and test files (Lucas Taniguti)
  • 2beb8d8: ♻️ Refactor test path generation in create-task-test.py (Lucas Taniguti)
  • 71de03b: ♻️ Update output paths in generate_tests_for_task function (Lucas Taniguti)
  • 21f89b0: ✨ Add Minimap2Align task and tests (Lucas Taniguti)
  • dee71fb: ✨ Add MakeMinimap2Index task and test files (Lucas Taniguti)
  • 5ce1d62: ✨ Add HISAT2Build task and test files (Lucas Taniguti)
  • 7bfefe8: ♻️ Refactor generate_tests_for_task function (Lucas Taniguti)
  • 87d155f: 🐛 Update tags in test_hisat2_build_task.yaml (Lucas Taniguti)
  • e7b0ca6: ♻️ Add additional files to artifact upload (Lucas Taniguti)
  • c98f60f: ✨ Add HISAT2PairedEnd task and test files (Lucas Taniguti)
  • b0bf893: 💚 Add PR Workflow and include WDL file changes (Lucas Taniguti)
  • fea4d90: 💚 Remove PR Workflow YAML file (Lucas Taniguti)
  • 4b377f7: ✅ Add more tests for several tasks (Lucas Taniguti)
  • b0892b5: ✨ Add mosdepth.wdl and related test files (Lucas Taniguti)
  • 446af75: ✨ Add new tasks for BWA, Samtools, Bcftools, Bedtools, and Sniffles (Lucas Taniguti) #1
  • 6ee00ef: ✅ Add samtools_merge, samtools_sort, and tests for ConvertToCram, Merge, and Sort tasks (Lucas Taniguti) #1
  • 4a3a1db: 🐛 Update command in test_sort_task.yaml (Lucas Taniguti) #1
  • 9336bba: ✅ Update outname variable in sniffles.wdl and add test files for sniffles task (Lucas Taniguti) #1
  • 9355edd: ✅ Add Sort and Norm tasks with corresponding tests (Lucas Taniguti) #1
  • cd5f4ce: ✅ Add Picard tests (Lucas Taniguti) #1
  • cf503dc: ✅ Add bwa and bedtools tests (Lucas Taniguti) #1
  • 564173b: ✅ Update MarkDuplicates task to include metrics file (Lucas Taniguti) #1
  • 17a4016: 🐛 Update task names for Sort commands (Lucas Taniguti) #2
  • 5e86c96: ♻️ Update converttocram.wdl script to set -e -o pipefail in command (Lucas Taniguti) #2
  • 1cdb606: 📝 Update import path in README.md (Lucas Taniguti)
  • 6b02722: ♻️ Refactor BwaMem task inputs (Lucas Taniguti)
  • 1915f56: 💚 Change Github actions setup (Lucas Taniguti)
  • ea86643: 💚 Update GitHub Actions workflow to include YAML files in tests directory (Lucas Taniguti)
  • 1ea673a: github actions (Lucas Taniguti)
Assets 3
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