add tutorials

lnccbrown · Dec 12, 2024 · 5eeb2d4 · 5eeb2d4
1 parent df3c263
commit 5eeb2d4
Show file tree

Hide file tree

Showing 15 changed files with 7,053 additions and 6 deletions.
diff --git a/docs/changelog.md b/docs/changelog.md
@@ -2,6 +2,16 @@
 
 ## 0.2.x
 
+### 0.2.5
+
+This version of HSSM incorporated the following changes:
+
+1. We added a new tutorial on how to use custom likelihood functions with HSSM.
+2. Added convenience function `compile_logp()` to return a compiled log-likelihood function to be used freely downstream.
+3. Some improvements to internals to allow for (1.)
+4. Major improvments to plotting with `model_cartoon_plots()`
+5. Refactoring and minor improvements to pre-existing plots
+
 ### 0.2.4
 
 This version of HSSM incorporated the following changes:

diff --git a/docs/overrides/main.html b/docs/overrides/main.html
@@ -5,7 +5,7 @@
   </span>
   Navigate the site here!
 </span>
-<span class="right-margin"> v0.2.4 is released! </span>
+<span class="right-margin"> v0.2.5 is released! </span>
 <span>
   <span class="twemoji">
     {% include ".icons/material/head-question.svg" %}

diff --git a/docs/tutorials/blackbox_contribution_onnx_example.ipynb b/docs/tutorials/blackbox_contribution_onnx_example.ipynb
diff --git a/docs/tutorials/compile_logp.ipynb b/docs/tutorials/compile_logp.ipynb
diff --git a/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_data_details.pickle b/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_data_details.pickle
diff --git a/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_network_config.pickle b/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_network_config.pickle
diff --git a/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_train_config.pickle b/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_train_config.pickle
diff --git a/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_train_state.jax b/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_train_state.jax
diff --git a/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_training_history.csv b/docs/tutorials/data/jax_models/ddm/ddm_jax_lan_training_history.csv
@@ -0,0 +1,21 @@
+,epoch,val_loss
+0,0.0,0.08957315236330032
+1,1.0,0.10666166245937347
+2,2.0,0.08405958116054535
+3,3.0,0.08327259123325348
+4,4.0,0.10983947664499283
+5,5.0,0.09185060113668442
+6,6.0,0.09421870112419128
+7,7.0,0.093417227268219
+8,8.0,0.08739369362592697
+9,9.0,0.0797438845038414
+10,10.0,0.07186270505189896
+11,11.0,0.07257602363824844
+12,12.0,0.06973335146903992
+13,13.0,0.06838957965373993
+14,14.0,0.06252704560756683
+15,15.0,0.06026891991496086
+16,16.0,0.061097651720047
+17,17.0,0.059597570449113846
+18,18.0,0.059423770755529404
+19,19.0,0.058538973331451416
diff --git a/docs/tutorials/data/race_3_no_bias_lan_batch.onnx b/docs/tutorials/data/race_3_no_bias_lan_batch.onnx
diff --git a/docs/tutorials/data/race_3_no_bias_lan_no_batch.onnx b/docs/tutorials/data/race_3_no_bias_lan_no_batch.onnx