fixed all random effects in documentation

lnccbrown · Apr 12, 2024 · ff487b2 · ff487b2
1 parent 47d885a
commit ff487b2
Show file tree

Hide file tree

Showing 6 changed files with 7 additions and 7 deletions.
diff --git a/README.md b/README.md
@@ -116,7 +116,7 @@ model = hssm.HSSM(
                 "Intercept": {"name": "Normal", "mu": 0.0, "sigma": 0.1},
                 "theta": {"name": "Normal", "mu": 0.0, "sigma": 0.1},
             },
-            "formula": "v ~ theta + 1|participant_id",
+            "formula": "v ~ theta + (1|participant_id)",
             "link": "identity",
         },
     ],

diff --git a/docs/getting_started/hierarchical_modeling.ipynb b/docs/getting_started/hierarchical_modeling.ipynb
@@ -118,7 +118,7 @@
     "# The dictionary way:\n",
     "param_v = {\n",
     "    \"name\": \"v\",\n",
-    "    \"formula\": \"v ~ + x + y + x:y + (1|participant_id)\",\n",
+    "    \"formula\": \"v ~ x + y + x:y + (1|participant_id)\",\n",
     "    \"link\": \"identity\",\n",
     "    \"prior\": {\n",
     "        \"Intercept\": {\"name\": \"Normal\", \"mu\": 0.0, \"sigma\": 0.25},\n",

diff --git a/docs/index.md b/docs/index.md
@@ -124,7 +124,7 @@ model = hssm.HSSM(
                 "Intercept": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                 "theta": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
             },
-            "formula": "v ~ theta + 1|participant_id",
+            "formula": "v ~ theta + (1|participant_id)",
             "link": "identity",
         },
     ],

diff --git a/docs/tutorials/plotting.ipynb b/docs/tutorials/plotting.ipynb
@@ -267,7 +267,7 @@
     "                \"Intercept\": {\"name\": \"Normal\", \"mu\": 0.0, \"sigma\": 1.0},\n",
     "                \"theta\": {\"name\": \"Normal\", \"mu\": 0.0, \"sigma\": 1.0},\n",
     "            },\n",
-    "            \"formula\": \"v ~ (1|participant_id) + theta\",\n",
+    "            \"formula\": \"v ~  theta + (1|participant_id)\",\n",
     "            \"link\": \"identity\",\n",
     "        },\n",
     "    ],\n",

diff --git a/tests/test_plotting.py b/tests/test_plotting.py
@@ -162,7 +162,7 @@ def test_plot_posterior_predictive(cav_idata, cavanagh_test):
                     "Intercept": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                     "theta": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                 },
-                "formula": "v ~ (1|participant_id) + theta",
+                "formula": "v ~ theta + (1|participant_id)",
                 "link": "identity",
             },
         ],
@@ -300,7 +300,7 @@ def test_plot_quantile_probability(cav_idata, cavanagh_test):
                     "Intercept": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                     "theta": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                 },
-                "formula": "v ~ (1|participant_id) + theta",
+                "formula": "v ~ theta + (1|participant_id)",
                 "link": "identity",
             },
         ],

diff --git a/tests/test_sample_posterior_predictive.py b/tests/test_sample_posterior_predictive.py
@@ -13,7 +13,7 @@ def test_sample_posterior_predictive(cav_idata, cavanagh_test):
                     "Intercept": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                     "theta": {"name": "Normal", "mu": 0.0, "sigma": 1.0},
                 },
-                "formula": "v ~ (1|participant_id) + theta",
+                "formula": "v ~ theta + (1|participant_id)",
                 "link": "identity",
             },
         ],