MACS3 Publish to Anaconda/macs3 #7
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: MACS3 Publish to Anaconda/macs3 | |
| on: | |
| workflow_dispatch: | |
| release: | |
| types: [published] | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.11'] | |
| arch: ['x64'] | |
| name: Build conda package in x64 under Python ${{ matrix.python-version }} | |
| steps: | |
| - name: Check out MACS3 with submodules | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: 'true' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Install conda dependencies | |
| run: | | |
| conda config --set always_yes yes --set changeps1 no | |
| # need conda-build/verify to test building conda package | |
| conda install -q conda-build | |
| conda install -q conda-verify | |
| conda update -q conda | |
| # Useful for debugging any issues with conda | |
| conda info -a | |
| # configure the channels | |
| conda config --add channels defaults | |
| conda config --add channels conda-forge | |
| conda config --add channels macs3 | |
| conda install -q mamba -c conda-forge | |
| - name: Build conda package | |
| run: | | |
| mkdir bld-dir | |
| conda build -q conda/macs3 --output-folder bld-dir | |
| - name: Test installing conda package | |
| run: | | |
| # Now add this folder as a highest priority channel | |
| conda config --add channels "file://`pwd`/bld-dir" | |
| # install MACS3 from local repo | |
| mamba create -q -n MACS3 macs3 | |
| # Activate this environment | |
| source /usr/share/miniconda/etc/profile.d/conda.sh | |
| conda activate MACS3 | |
| # list conda env packages for reference | |
| conda list | |
| - name: Test installed MACS3 package (cmdline) | |
| run: | | |
| source /usr/share/miniconda/etc/profile.d/conda.sh | |
| conda activate MACS3 | |
| pytest --runxfail | |
| cd test | |
| ./cmdlinetest macs3 | |
| cd .. | |
| - name: Publish | |
| env: | |
| ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | |
| run: | | |
| mamba install anaconda-client | |
| anaconda upload bld-dir/**/macs3-*.tar.bz2 | |