DESCRIPTION

Package: ClustAssess
Type: Package
Title: Tools for Assessing Clustering
Version: 0.3.1
Authors@R: c(person("Arash", "Shahsavari", email="as3006@cam.ac.uk",
                  role = c("aut", "cre")), person("Andi", "Munteanu",
                  email="am3019@cam.ac.uk", role="aut"), person("Irina", "Mohorianu",
                  email="iim22@cam.ac.uk", role="aut"))
Maintainer: Arash Shahsavari <as3006@cam.ac.uk>
Description: A set of tools for evaluating clustering robustness using 
    proportion of ambiguously clustered pairs (Senbabaoglu et al. (2014) 
    <doi:10.1038/srep06207>), as well as similarity across methods 
    and method stability using element-centric clustering comparison (Gates et 
    al. (2019) <doi:10.1038/s41598-019-44892-y>). Additionally, this package 
    enables stability-based parameter assessment for graph-based clustering 
    pipelines typical in single-cell data analysis.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: 
    ggplot2,
    dplyr,
    fastcluster,
    rlang,
    Matrix,
    igraph,
    magrittr,
    Rcpp,
    methods,
    stats,
    foreach,
    doParallel,
    irlba,
    progress,
    reshape2,
    stringr,
    gtable,
    uwot
RoxygenNote: 7.2.0
LinkingTo: 
    Rcpp
Suggests: 
    knitr,
    rmarkdown,
    e1071,
    dbscan,
    dendextend,
    Seurat,
    readr,
    patchwork
URL: https://github.com/Core-Bioinformatics/ClustAssess
BugReports: https://github.com/Core-Bioinformatics/ClustAssess/issues
VignetteBuilder: knitr