v2.3

chnages to include condaEnvPrefix for all ProcessBuilder calls
Refactor alignassemblies
Merge gvcfs clikt command
Multi ref range read mapping
Fixed pulling chrom name from fasta idLine
Gvcf from hvcf
added PrepareSlurmAlignFile to Phg.kt
Multiple file bug create fasta from hcvcf
Merge hvcf file hvcf dir create fasta from hvcf
Speedup map kmers
add condaEnvPrefix to Gvcf2hvcf and places it is called
Fixing Build Kmer Index Diagnostic Error.
Setup env file not exist
Hvcf2gvcf ref allele wrong
change CliktCommands to use required() for required parameters