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Add PHGDataSet class and methods #3

Merged
merged 7 commits into from
Apr 24, 2024
Merged

Add PHGDataSet class and methods #3

merged 7 commits into from
Apr 24, 2024

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btmonier
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This PR adds the following:

  • Added new class, PHGDataSet
    • In memory representation of hVCF data sets
  • Added new function, filterRefRanges()
    • Filters relevant rPHG2 data objects by reference range
    • Requires a GRanges object as input
  • Added new function, filterSamples()
    • Filters relevant rPHG2 data objects by sample ID
    • Input is a basic character vector of sample identifiers

@btmonier btmonier added the enhancement New feature or request label Apr 24, 2024
@btmonier btmonier self-assigned this Apr 24, 2024
@btmonier btmonier merged commit 288bebb into main Apr 24, 2024
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@btmonier btmonier deleted the phg-dataset branch April 25, 2024 14:37
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@zrm22 zrm22 zrm22 approved these changes

@lynnjo lynnjo lynnjo approved these changes

@tcasstevens tcasstevens tcasstevens approved these changes

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@btmonier @tcasstevens @lynnjo @zrm22